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482
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How should the the correlation of module eigengenes with categorical external traits be assessed in WGCNA?
RNA-seq Correlation WGCNA
updated 9 weeks ago by ▴ 60 • written 10 weeks ago by ▴ 10
0
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1
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320
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When do we consider TCGA mRNA and miRNA data as matched samples?
TCGA GDC RNA-seq mRNA miRNA
updated 5 months ago by ▴ 570 • written 9 months ago by ▴ 10
1
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0
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214
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How to prepare the data prior to Quantile Normalization for comparisons across studies/platforms ?
microarray normalization RNA-seq Quantile-normalization quantile
8 months ago by BioNovice247 ▴ 10
0
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0
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392
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Comment: Comment: Normalization of RNA-seq data across tumors. Should I pool the samples?
8 months ago by BioNovice247 ▴ 10
0
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2
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392
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Normalization of RNA-seq data across tumors. Should I pool the samples?
DESeq2 TCGA RNA-seq VST Normalization
8 months ago by BioNovice247 ▴ 10
0
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41k
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Comment: Comment: PCA plot from read count matrix from RNA-Seq
9 months ago by BioNovice247 ▴ 10
0
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0
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703
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Comment: Comment: What is the most appropriate method for correlation analysis of mRNA-target corr
9 months ago by BioNovice247 ▴ 10
0
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1
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703
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Comment: Comment: What is the most appropriate method for correlation analysis of mRNA-target corr
9 months ago by BioNovice247 ▴ 10
1
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4
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703
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What is the most appropriate method for correlation analysis of mRNA-target correlations? And why?
data pearson spearman expression correlation kendall
9 months ago by BioNovice247 ▴ 10
0
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0
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731
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Comment: Comment: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
10 months ago by BioNovice247 ▴ 10
0
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1
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731
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Comment: Comment: How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
10 months ago by BioNovice247 ▴ 10
2
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4
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731
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How to normalize Kallisto count matrix collapsed at gene-level with TMM/DESeq2?
DESeq2 TMM Kallisto edgeR
10 months ago by BioNovice247 ▴ 10
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