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725
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WNN (Seurat v4) vs. totalVI (scvi-tools) for CITE-seq data
10X
single-cell
seurat
scRNAseq
RNAseq
2.7 years ago by
MutationalMeltdown
▴ 180
0
votes
0
replies
580
views
Normalisation for single nuclei RNA-seq
seurat
scRNAseq
RNAseq
scanpy
10x
2.7 years ago by
MutationalMeltdown
▴ 180
13
votes
15
replies
5.9k
views
Single cell RNA-seq: how many PCs to use for t-SNE/UMAP?
umap
pca
scRNA-seq
t-sne
RNA-seq
3.0 years ago by
MutationalMeltdown
▴ 180
0
votes
6
replies
3.1k
views
Best compression for single cell RNA-seq object
seurat
rna-seq
scanpy
single-cell
scRNA-seq
updated 2.7 years ago by
chansigit
• 0 • written 3.1 years ago by
MutationalMeltdown
▴ 180
2
votes
1
reply
684
views
Meaning of plus symbol "+" in bcl2fastq reported barcodes
bcl2fastq
demultiplexing
sequencing
illumina
3.5 years ago by
MutationalMeltdown
▴ 180
15
votes
5
replies
5.3k
views
Force directed graphs compared to other dimensionality reduction methods for scRNA-seq
RNA-Seq
scRNA-Seq
single cell
machine learning
updated 4.2 years ago by
Jean-Karim Heriche
27k • written 4.3 years ago by
MutationalMeltdown
▴ 180
1
vote
2
replies
3.1k
views
Understanding kallisto qc metrics in run_info.json
RNA-Seq
kallisto
scRNA-seq
alignment
4.6 years ago by
MutationalMeltdown
▴ 180
0
votes
6
replies
3.5k
views
What does a 'normal' FASTQC report look like for scRNA-seq data?
RNA-Seq
scRNA-seq
fastqc
fastq
10x
4.7 years ago by
MutationalMeltdown
▴ 180
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