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Comment:
Comment: Difference in relative abundance between MicrobiomeDB and r phyloseq
4 days ago by
Chris Dean
▴ 390
0
votes
1
reply
352
views
Comment:
Comment: Differential express genes in imbalance groups
10 days ago by
Chris Dean
▴ 390
1
vote
0
replies
525
views
Comment:
Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
15 days ago by
Chris Dean
▴ 390
0
votes
1
reply
525
views
Comment:
Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
16 days ago by
Chris Dean
▴ 390
0
votes
0
replies
248
views
Comment:
Comment: UMI and index sequence in RNA-seq data
5 weeks ago by
Chris Dean
▴ 390
0
votes
0
replies
323
views
Comment:
Comment: How to do DESeq2 on Kallisto Data
7 weeks ago by
Chris Dean
▴ 390
0
votes
1
reply
312
views
Comment:
Comment: Decision of Random Effect and Random Slope in rare cases
7 weeks ago by
Chris Dean
▴ 390
1
vote
0
replies
271
views
Comment:
Comment: Correcting Farm effects
8 weeks ago by
Chris Dean
▴ 390
0
votes
2
replies
362
views
Confusion about "Top Features table" in cellranger web summary output for CITE-Seq libraries
single-cell
updated 3 months ago by
ATpoint
81k • written 3 months ago by
Chris Dean
▴ 390
1
vote
0
replies
455
views
Answer:
Answer: Options for assigning cell labels to barcodes from CITE-seq experiment
4 months ago by
Chris Dean
▴ 390
0
votes
0
replies
455
views
Comment:
Comment: Options for assigning cell labels to barcodes from CITE-seq experiment
4 months ago by
Chris Dean
▴ 390
2
votes
3
replies
455
views
Options for assigning cell labels to barcodes from CITE-seq experiment
single-cell
4 months ago by
Chris Dean
▴ 390
0
votes
0
replies
858
views
Comment:
Comment: Phyloseq sample data error: non-zero dimensions?
5 months ago by
Chris Dean
▴ 390
0
votes
1
reply
858
views
Comment:
Comment: Phyloseq sample data error: non-zero dimensions?
5 months ago by
Chris Dean
▴ 390
0
votes
0
replies
555
views
Comment:
Comment: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
5 months ago by
Chris Dean
▴ 390
1
vote
1
reply
555
views
Answer:
Answer: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
5 months ago by
Chris Dean
▴ 390
6
votes
1
reply
5.4k
views
Comment:
Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
5 months ago by
Chris Dean
▴ 390
0
votes
1
reply
441
views
Comment:
Comment: Adjusting covariate in regression model
7 months ago by
Chris Dean
▴ 390
0
votes
0
replies
449
views
Comment:
Comment: Assigning cell types to cells based on expression of cell surface markers
8 months ago by
Chris Dean
▴ 390
1
vote
2
replies
449
views
Assigning cell types to cells based on expression of cell surface markers
tapestri
single-cell
8 months ago by
Chris Dean
▴ 390
1
vote
0
replies
856
views
Comment:
Comment: phyloseq error
11 months ago by
Chris Dean
▴ 390
0
votes
0
replies
742
views
Comment:
Comment: Database for taxonomic assignment of shotgun sequencing reads data
16 months ago by
Chris Dean
▴ 390
0
votes
0
replies
724
views
Comment:
Comment: Need help in using dada2
17 months ago by
Chris Dean
▴ 390
0
votes
0
replies
481
views
Comment:
Comment: Identification of conserved and varaible regions on 16s rRNA sequences
21 months ago by
Chris Dean
▴ 390
2
votes
1
reply
1.3k
views
Comment:
Comment: losing large amount of reads when using Qiime2 vsearch joinpairs command
22 months ago by
Chris Dean
▴ 390
1
vote
1
reply
916
views
Comment:
Comment: Load cvs files into R to make manhattan plots using ggplot
2.1 years ago by
Chris Dean
▴ 390
1
vote
2
replies
1.1k
views
Comment:
Comment: What should I choose for a bachelor's and master's degree
2.1 years ago by
Chris Dean
▴ 390
0
votes
1
reply
1.1k
views
Comment:
Comment: Bioinformatics Scientist
2.1 years ago by
Chris Dean
▴ 390
0
votes
0
replies
807
views
Comment:
Comment: Coping with duplicated sequences in shotgun analysis
2.1 years ago by
Chris Dean
▴ 390
1
vote
0
replies
781
views
Comment:
Comment: Name for bulk-metagenomic studies?
2.1 years ago by
Chris Dean
▴ 390
2
votes
1
reply
700
views
Choosing the number of components in a DMM model
Microbiome
Clustering
Statistics
updated 2.1 years ago by
Jean-Karim Heriche
27k • written 2.1 years ago by
Chris Dean
▴ 390
0
votes
1
reply
1.0k
views
Comment:
Comment: Trimmomatic parameters
2.2 years ago by
Chris Dean
▴ 390
0
votes
0
replies
712
views
Comment:
Comment: How to calculate similarity of two bacterial compositions?
2.2 years ago by
Chris Dean
▴ 390
0
votes
1
reply
712
views
Comment:
Comment: How to calculate similarity of two bacterial compositions?
2.2 years ago by
Chris Dean
▴ 390
0
votes
0
replies
854
views
Comment:
Comment: rarefaction curve
2.3 years ago by
Chris Dean
▴ 390
0
votes
1
reply
759
views
Comment:
Comment: ordination analysis
2.3 years ago by
Chris Dean
▴ 390
0
votes
1
reply
759
views
Answer:
Answer: ordination analysis
2.3 years ago by
Chris Dean
▴ 390
2
votes
1
reply
1.9k
views
Answer:
Answer: extremely low classified reads from sequencing gut microbiome data, applying rea
2.4 years ago by
Chris Dean
▴ 390
0
votes
0
replies
926
views
Comment:
Comment: bowtie2 and then HISAT2? What does it mean in Data processing details on a paper
2.4 years ago by
Chris Dean
▴ 390
0
votes
1
reply
2.4k
views
Comment:
Comment: Recommended mapper
2.4 years ago by
Chris Dean
▴ 390
1
vote
1
reply
2.4k
views
Answer:
Answer: Recommended mapper
2.4 years ago by
Chris Dean
▴ 390
0
votes
0
replies
1.3k
views
Answer:
Answer: help with time series analysis
2.4 years ago by
Chris Dean
▴ 390
0
votes
2
replies
1.4k
views
Comment:
Comment: Subset a Vcf
2.5 years ago by
Chris Dean
▴ 390
0
votes
1
reply
1.0k
views
Answer:
Answer: Memory and time Estimates for 100x genome alignments
2.5 years ago by
Chris Dean
▴ 390
1
vote
1
reply
1.2k
views
Answer:
Answer: Type of analyses Which can be performed on Whole Genome Data
2.5 years ago by
Chris Dean
▴ 390
0
votes
2
replies
2.3k
views
Comment:
Comment: Using samtools to read a bam file
2.5 years ago by
Chris Dean
▴ 390
1
vote
1
reply
2.3k
views
Comment:
Comment: Using samtools to read a bam file
2.5 years ago by
Chris Dean
▴ 390
2
votes
1
reply
2.3k
views
Comment:
Comment: Using samtools to read a bam file
2.5 years ago by
Chris Dean
▴ 390
3
votes
1
reply
751
views
Answer:
Answer: Regarding data analysis for my research project (Plant genome)
2.5 years ago by
Chris Dean
▴ 390
3
votes
0
replies
2.9k
views
Answer:
Answer: how to pheatmap color bar based on column category
2.5 years ago by
Chris Dean
▴ 390
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