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Comment:
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
12 months ago by
Chris Dean
▴ 420
1
vote
1
reply
1.5k
views
Comment:
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
12 months ago by
Chris Dean
▴ 420
0
votes
1
reply
1.5k
views
Answer:
Answer: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
12 months ago by
Chris Dean
▴ 420
0
votes
1
reply
1.5k
views
Comment:
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
12 months ago by
Chris Dean
▴ 420
0
votes
1
reply
722
views
Comment:
Comment: CCA with random effects model
13 months ago by
Chris Dean
▴ 420
1
vote
0
replies
490
views
Comment:
Comment: Difference in relative abundance between MicrobiomeDB and r phyloseq
14 months ago by
Chris Dean
▴ 420
0
votes
1
reply
1.2k
views
Comment:
Comment: Differential express genes in imbalance groups
14 months ago by
Chris Dean
▴ 420
1
vote
0
replies
1.5k
views
Comment:
Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
14 months ago by
Chris Dean
▴ 420
0
votes
1
reply
1.5k
views
Comment:
Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
14 months ago by
Chris Dean
▴ 420
0
votes
0
replies
449
views
Comment:
Comment: UMI and index sequence in RNA-seq data
15 months ago by
Chris Dean
▴ 420
0
votes
0
replies
844
views
Comment:
Comment: How to do DESeq2 on Kallisto Data
15 months ago by
Chris Dean
▴ 420
0
votes
1
reply
579
views
Comment:
Comment: Decision of Random Effect and Random Slope in rare cases
15 months ago by
Chris Dean
▴ 420
1
vote
0
replies
541
views
Comment:
Comment: Correcting Farm effects
15 months ago by
Chris Dean
▴ 420
0
votes
2
replies
695
views
Confusion about "Top Features table" in cellranger web summary output for CITE-Seq libraries
single-cell
updated 17 months ago by
ATpoint
88k • written 17 months ago by
Chris Dean
▴ 420
1
vote
0
replies
933
views
Answer:
Answer: Options for assigning cell labels to barcodes from CITE-seq experiment
18 months ago by
Chris Dean
▴ 420
0
votes
0
replies
933
views
Comment:
Comment: Options for assigning cell labels to barcodes from CITE-seq experiment
18 months ago by
Chris Dean
▴ 420
2
votes
3
replies
933
views
Options for assigning cell labels to barcodes from CITE-seq experiment
single-cell
18 months ago by
Chris Dean
▴ 420
0
votes
0
replies
2.0k
views
Comment:
Comment: Phyloseq sample data error: non-zero dimensions?
19 months ago by
Chris Dean
▴ 420
0
votes
1
reply
2.0k
views
Comment:
Comment: Phyloseq sample data error: non-zero dimensions?
19 months ago by
Chris Dean
▴ 420
0
votes
0
replies
1.1k
views
Comment:
Comment: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
19 months ago by
Chris Dean
▴ 420
1
vote
1
reply
1.1k
views
Answer:
Answer: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
19 months ago by
Chris Dean
▴ 420
6
votes
1
reply
13k
views
Comment:
Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
19 months ago by
Chris Dean
▴ 420
0
votes
1
reply
817
views
Comment:
Comment: Adjusting covariate in regression model
20 months ago by
Chris Dean
▴ 420
0
votes
0
replies
839
views
Comment:
Comment: Assigning cell types to cells based on expression of cell surface markers
22 months ago by
Chris Dean
▴ 420
1
vote
2
replies
839
views
Assigning cell types to cells based on expression of cell surface markers
tapestri
single-cell
22 months ago by
Chris Dean
▴ 420
1
vote
0
replies
1.5k
views
Comment:
Comment: phyloseq error
2.1 years ago by
Chris Dean
▴ 420
0
votes
0
replies
1.1k
views
Comment:
Comment: Database for taxonomic assignment of shotgun sequencing reads data
2.5 years ago by
Chris Dean
▴ 420
0
votes
0
replies
1.1k
views
Comment:
Comment: Need help in using dada2
2.6 years ago by
Chris Dean
▴ 420
0
votes
0
replies
758
views
Comment:
Comment: Identification of conserved and varaible regions on 16s rRNA sequences
2.9 years ago by
Chris Dean
▴ 420
2
votes
1
reply
1.9k
views
Comment:
Comment: losing large amount of reads when using Qiime2 vsearch joinpairs command
3.0 years ago by
Chris Dean
▴ 420
1
vote
1
reply
1.3k
views
Comment:
Comment: Load cvs files into R to make manhattan plots using ggplot
3.2 years ago by
Chris Dean
▴ 420
1
vote
2
replies
1.5k
views
Comment:
Comment: What should I choose for a bachelor's and master's degree
3.2 years ago by
Chris Dean
▴ 420
0
votes
1
reply
1.3k
views
Comment:
Comment: Bioinformatics Scientist
3.3 years ago by
Chris Dean
▴ 420
0
votes
0
replies
1.2k
views
Comment:
Comment: Coping with duplicated sequences in shotgun analysis
3.3 years ago by
Chris Dean
▴ 420
1
vote
0
replies
1.0k
views
Comment:
Comment: Name for bulk-metagenomic studies?
3.3 years ago by
Chris Dean
▴ 420
2
votes
1
reply
1.0k
views
Choosing the number of components in a DMM model
Microbiome
Clustering
Statistics
updated 3.3 years ago by
Jean-Karim Heriche
27k • written 3.3 years ago by
Chris Dean
▴ 420
0
votes
1
reply
1.4k
views
Comment:
Comment: Trimmomatic parameters
3.4 years ago by
Chris Dean
▴ 420
0
votes
0
replies
1.0k
views
Comment:
Comment: How to calculate similarity of two bacterial compositions?
3.4 years ago by
Chris Dean
▴ 420
0
votes
1
reply
1.0k
views
Comment:
Comment: How to calculate similarity of two bacterial compositions?
3.4 years ago by
Chris Dean
▴ 420
0
votes
0
replies
1.2k
views
Comment:
Comment: rarefaction curve
3.4 years ago by
Chris Dean
▴ 420
0
votes
1
reply
1.2k
views
Comment:
Comment: ordination analysis
3.4 years ago by
Chris Dean
▴ 420
0
votes
1
reply
1.2k
views
Answer:
Answer: ordination analysis
3.4 years ago by
Chris Dean
▴ 420
2
votes
1
reply
2.8k
views
Answer:
Answer: extremely low classified reads from sequencing gut microbiome data, applying rea
3.5 years ago by
Chris Dean
▴ 420
0
votes
0
replies
1.2k
views
Comment:
Comment: bowtie2 and then HISAT2? What does it mean in Data processing details on a paper
3.6 years ago by
Chris Dean
▴ 420
0
votes
1
reply
3.5k
views
Comment:
Comment: Recommended mapper
3.6 years ago by
Chris Dean
▴ 420
1
vote
1
reply
3.5k
views
Answer:
Answer: Recommended mapper
3.6 years ago by
Chris Dean
▴ 420
0
votes
0
replies
1.9k
views
Answer:
Answer: help with time series analysis
3.6 years ago by
Chris Dean
▴ 420
0
votes
2
replies
2.0k
views
Comment:
Comment: Subset a Vcf
3.6 years ago by
Chris Dean
▴ 420
0
votes
1
reply
1.3k
views
Answer:
Answer: Memory and time Estimates for 100x genome alignments
3.6 years ago by
Chris Dean
▴ 420
1
vote
1
reply
1.6k
views
Answer:
Answer: Type of analyses Which can be performed on Whole Genome Data
3.6 years ago by
Chris Dean
▴ 420
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