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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
16 months ago by Chris Dean ▴ 420
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1.7k
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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
16 months ago by Chris Dean ▴ 420
0
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1
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1.7k
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Answer: Answer: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
16 months ago by Chris Dean ▴ 420
0
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1
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1.7k
views
Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
16 months ago by Chris Dean ▴ 420
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1
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948
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Comment: Comment: CCA with random effects model
17 months ago by Chris Dean ▴ 420
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0
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584
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Comment: Comment: Difference in relative abundance between MicrobiomeDB and r phyloseq
18 months ago by Chris Dean ▴ 420
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1
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1.5k
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Comment: Comment: Differential express genes in imbalance groups
18 months ago by Chris Dean ▴ 420
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1.8k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
18 months ago by Chris Dean ▴ 420
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1
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1.8k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
18 months ago by Chris Dean ▴ 420
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0
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533
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Comment: Comment: UMI and index sequence in RNA-seq data
19 months ago by Chris Dean ▴ 420
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0
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994
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Comment: Comment: How to do DESeq2 on Kallisto Data
19 months ago by Chris Dean ▴ 420
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1
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664
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Comment: Comment: Decision of Random Effect and Random Slope in rare cases
19 months ago by Chris Dean ▴ 420
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639
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Comment: Comment: Correcting Farm effects
20 months ago by Chris Dean ▴ 420
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2
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796
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Confusion about "Top Features table" in cellranger web summary output for CITE-Seq libraries
single-cell
updated 21 months ago by 89k • written 21 months ago by ▴ 420
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1.1k
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Answer: Answer: Options for assigning cell labels to barcodes from CITE-seq experiment
22 months ago by Chris Dean ▴ 420
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0
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1.1k
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Comment: Comment: Options for assigning cell labels to barcodes from CITE-seq experiment
22 months ago by Chris Dean ▴ 420
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3
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1.1k
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Options for assigning cell labels to barcodes from CITE-seq experiment
single-cell
22 months ago by Chris Dean ▴ 420
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0
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2.3k
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Comment: Comment: Phyloseq sample data error: non-zero dimensions?
23 months ago by Chris Dean ▴ 420
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1
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2.3k
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Comment: Comment: Phyloseq sample data error: non-zero dimensions?
23 months ago by Chris Dean ▴ 420
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0
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1.3k
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Comment: Comment: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
23 months ago by Chris Dean ▴ 420
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1
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1.3k
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Answer: Answer: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
23 months ago by Chris Dean ▴ 420
6
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1
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15k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
23 months ago by Chris Dean ▴ 420
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1
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918
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Comment: Comment: Adjusting covariate in regression model
2.1 years ago by Chris Dean ▴ 420
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0
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1.1k
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Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
2.2 years ago by Chris Dean ▴ 420
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2
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1.1k
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Assigning cell types to cells based on expression of cell surface markers
tapestri single-cell
2.2 years ago by Chris Dean ▴ 420
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0
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1.6k
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Comment: Comment: phyloseq error
2.5 years ago by Chris Dean ▴ 420
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4.0k
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Comment: Comment: Database for taxonomic assignment of shotgun sequencing reads data
2.8 years ago by Chris Dean ▴ 420
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0
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1.3k
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Comment: Comment: Need help in using dada2
3.0 years ago by Chris Dean ▴ 420
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0
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827
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Comment: Comment: Identification of conserved and varaible regions on 16s rRNA sequences
3.3 years ago by Chris Dean ▴ 420
2
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1
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2.1k
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Comment: Comment: losing large amount of reads when using Qiime2 vsearch joinpairs command
3.4 years ago by Chris Dean ▴ 420
1
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1
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1.4k
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Comment: Comment: Load cvs files into R to make manhattan plots using ggplot
3.6 years ago by Chris Dean ▴ 420
1
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2
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1.7k
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Comment: Comment: What should I choose for a bachelor's and master's degree
3.6 years ago by Chris Dean ▴ 420
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1
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1.5k
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Comment: Comment: Bioinformatics Scientist
3.6 years ago by Chris Dean ▴ 420
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0
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1.3k
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Comment: Comment: Coping with duplicated sequences in shotgun analysis
3.6 years ago by Chris Dean ▴ 420
1
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0
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1.1k
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Comment: Comment: Name for bulk-metagenomic studies?
3.6 years ago by Chris Dean ▴ 420
2
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1
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1.1k
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Choosing the number of components in a DMM model
Microbiome Clustering Statistics
updated 3.6 years ago by 27k • written 3.6 years ago by ▴ 420
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1
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1.5k
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Comment: Comment: Trimmomatic parameters
3.7 years ago by Chris Dean ▴ 420
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0
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1.2k
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Comment: Comment: How to calculate similarity of two bacterial compositions?
3.7 years ago by Chris Dean ▴ 420
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1
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1.2k
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Comment: Comment: How to calculate similarity of two bacterial compositions?
3.7 years ago by Chris Dean ▴ 420
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0
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1.4k
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Comment: Comment: rarefaction curve
3.8 years ago by Chris Dean ▴ 420
0
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1
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1.4k
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Comment: Comment: ordination analysis
3.8 years ago by Chris Dean ▴ 420
0
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1
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1.4k
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Answer: Answer: ordination analysis
3.8 years ago by Chris Dean ▴ 420
2
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1
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3.1k
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Answer: Answer: extremely low classified reads from sequencing gut microbiome data, applying rea
3.9 years ago by Chris Dean ▴ 420
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0
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1.4k
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Comment: Comment: bowtie2 and then HISAT2? What does it mean in Data processing details on a paper
3.9 years ago by Chris Dean ▴ 420
0
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1
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3.9k
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Comment: Comment: Recommended mapper
3.9 years ago by Chris Dean ▴ 420
1
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1
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3.9k
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Answer: Answer: Recommended mapper
3.9 years ago by Chris Dean ▴ 420
0
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0
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2.2k
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Answer: Answer: help with time series analysis
3.9 years ago by Chris Dean ▴ 420
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2
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2.3k
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Comment: Comment: Subset a Vcf
4.0 years ago by Chris Dean ▴ 420
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1
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1.5k
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Answer: Answer: Memory and time Estimates for 100x genome alignments
4.0 years ago by Chris Dean ▴ 420
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1
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1.8k
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Answer: Answer: Type of analyses Which can be performed on Whole Genome Data
4.0 years ago by Chris Dean ▴ 420
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