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Comment: C: Reproducible Science Short Example
updated 6.0 years ago by 45k • written 11.1 years ago by ★ 1.1k
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Answer: Answer: how to get actual gene sequence after cufflinks
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.1k
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Comment: Comment: Counting sense reads in bacterial paired-end RNA-seq data
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 1.1k
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Job: (Closed) Researcher in informatics - Genomics and Computational Biology, Bergen, Norway
next-gen-sequencing RNA-Seq
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.1k
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Answer: A: rnahybrid "Error in nextSQ. Aborting"
10.8 years ago by David Fredman ★ 1.1k
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Answer: Answer: R Equivalent of Cross-Gene Error Model (CGEM) (Rocke and Durbin 2001).
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 1.1k
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Comment: Comment: Rank Genes By FPKM for only One Sample
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 1.1k
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Comment: Comment: gft to fasta conversion
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.1k
2
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1
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29k
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Comment: Comment: gft to fasta conversion
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.1k
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Answer: Answer: gft to fasta conversion
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.1k
3
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1
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Answer: A: Looking for a tool to do GO enrichment analysis with BLAST2GO output(s)
10.8 years ago by David Fredman ★ 1.1k
1
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0
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11k
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Comment: Comment: Looking for a tool to do GO enrichment analysis with BLAST2GO output(s)
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.1k
0
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1
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7.9k
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Comment: Comment: edgeR / deSeq parallel usage
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 1.1k
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Answer: A: Grouping columns in a BED like file
11.1 years ago by David Fredman ★ 1.1k
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1
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Comment: C: Grouping columns in a BED like file
11.1 years ago by David Fredman ★ 1.1k
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3.2k
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Comment: C: GTF files for cufflinks
11.1 years ago by David Fredman ★ 1.1k
2
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2
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3.2k
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Answer: Answer: GTF files for cufflinks
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
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1
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6.6k
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Comment: Comment: How to get the expression level of specific gene without annotation in RNA-Seq?
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
2
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2
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Answer: Answer: How to get the expression level of specific gene without annotation in RNA-Seq?
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
1
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1
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4.8k
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Comment: Comment: How Can Cufflinks Assemble De Novo Transcripts With Many Exons When They Have 0
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
12
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1
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Answer: Answer: Annotating sequences after de-novo Trinity assembly and RSEM analysis...there mu
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
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Comment: C: Annotating sequences after de-novo Trinity assembly and RSEM analysis...there mu
11.1 years ago by David Fredman ★ 1.1k
1
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0
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2.9k
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Answer: Answer: How to prepare histogram for uniq reads count
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
2
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0
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Answer: Answer: Is correct finding unique reads with the flag -F 0x104?
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
4
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0
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Answer: Answer: How to download reference transcriptome file of species ?
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
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0
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8.2k
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Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
3
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1
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3.6k
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Answer: Answer: Reproducible Science Short Example
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
1
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1
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8.7k
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Comment: C: Extract common differentially expressed genes (DEGs) of different data sets. (Mi
11.1 years ago by David Fredman ★ 1.1k
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0
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3.9k
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Comment: Comment: How can I find the keys from a dictionary in a DNA sequence?
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
4
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1
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8.7k
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Answer: A: Extract common differentially expressed genes (DEGs) of different data sets. (Mi
11.1 years ago by David Fredman ★ 1.1k
2
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0
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6.1k
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Answer: Answer: RNA-seq GC content Bimodal distribution
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
0
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1
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2.8k
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Answer: A: miRNA -identification animal
11.1 years ago by David Fredman ★ 1.1k
1
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1
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8.2k
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Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
10
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0
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Answer: Answer: Best tools for circular genome visualization?
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
0
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0
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10k
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Comment: C: how to calculate p-value when the a sample has one value and the other sample h
11.1 years ago by David Fredman ★ 1.1k
0
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0
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6.1k
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Comment: C: Database for finding SNPs (Mutation-deletion/SNPs) In the promotor region of any
11.1 years ago by David Fredman ★ 1.1k
1
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1
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8.2k
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Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
1
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0
replies
10k
views
Answer: Answer: how to calculate p-value when the a sample has one value and the other sample h
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
1
vote
1
reply
8.2k
views
Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 1.1k
3
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1
reply
2.7k
views
Answer: Answer: R graphs without bar
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
3
votes
1
reply
5.9k
views
Answer: Answer: Counting sense reads in bacterial paired-end RNA-seq data
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
2
votes
1
reply
6.1k
views
Answer: Answer: Database for finding SNPs (Mutation-deletion/SNPs) In the promotor region of any
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
0
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0
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5.4k
views
Comment: Comment: Biomart R package - help writing biomart results into existing file.
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
5
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1
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5.4k
views
Answer: Answer: Biomart R package - help writing biomart results into existing file.
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
3
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1
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2.4k
views
Answer: A: How to sort PDB name
11.2 years ago by David Fredman ★ 1.1k
1
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1
reply
8.2k
views
Answer: Answer: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
0
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0
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3.7k
views
Answer: Answer: Identifying closest homologue of a protein sequence
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
2
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1
reply
5.5k
views
Answer: Answer: ncRNA Vs miRNA
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 1.1k
23
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3
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52k
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Answer: Answer: TCGA: What are mRNA expression z-scores? Does TCGA have mRNA expression from con
updated 4.4 years ago by 45k • written 11.2 years ago by ★ 1.1k
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