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Comment: C: Reproducible Science Short Example
updated 4.5 years ago by 43k • written 9.7 years ago by ★ 1.1k
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Answer: Answer: how to get actual gene sequence after cufflinks
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 1.1k
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Comment: Comment: Counting sense reads in bacterial paired-end RNA-seq data
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 1.1k
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Job: (Closed) Researcher in informatics - Genomics and Computational Biology, Bergen, Norway
next-gen-sequencing RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 1.1k
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Answer: A: rnahybrid "Error in nextSQ. Aborting"
9.4 years ago by David Fredman ★ 1.1k
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Answer: Answer: R Equivalent of Cross-Gene Error Model (CGEM) (Rocke and Durbin 2001).
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.1k
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Comment: Comment: Rank Genes By FPKM for only One Sample
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.1k
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Comment: Comment: gft to fasta conversion
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.1k
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1
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26k
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Comment: Comment: gft to fasta conversion
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.1k
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1
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Answer: Answer: gft to fasta conversion
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.1k
3
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1
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9.8k
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Answer: A: Looking for a tool to do GO enrichment analysis with BLAST2GO output(s)
9.4 years ago by David Fredman ★ 1.1k
1
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9.8k
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Comment: Comment: Looking for a tool to do GO enrichment analysis with BLAST2GO output(s)
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 1.1k
0
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1
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6.5k
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Comment: Comment: edgeR / deSeq parallel usage
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 1.1k
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Answer: A: Grouping columns in a BED like file
9.7 years ago by David Fredman ★ 1.1k
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1
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Comment: C: Grouping columns in a BED like file
9.7 years ago by David Fredman ★ 1.1k
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2.8k
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Comment: C: GTF files for cufflinks
9.7 years ago by David Fredman ★ 1.1k
2
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2
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2.8k
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Answer: Answer: GTF files for cufflinks
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
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1
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5.3k
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Comment: Comment: How to get the expression level of specific gene without annotation in RNA-Seq?
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
2
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2
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Answer: Answer: How to get the expression level of specific gene without annotation in RNA-Seq?
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
1
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1
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4.0k
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Comment: Comment: How Can Cufflinks Assemble De Novo Transcripts With Many Exons When They Have 0
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
12
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1
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Answer: Answer: Annotating sequences after de-novo Trinity assembly and RSEM analysis...there mu
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
0
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0
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Comment: C: Annotating sequences after de-novo Trinity assembly and RSEM analysis...there mu
9.7 years ago by David Fredman ★ 1.1k
1
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0
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2.6k
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Answer: Answer: How to prepare histogram for uniq reads count
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
2
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0
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Answer: Answer: Is correct finding unique reads with the flag -F 0x104?
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
4
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0
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Answer: Answer: How to download reference transcriptome file of species ?
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
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0
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Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
3
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1
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2.9k
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Answer: Answer: Reproducible Science Short Example
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
1
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1
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7.7k
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Comment: C: Extract common differentially expressed genes (DEGs) of different data sets. (Mi
9.7 years ago by David Fredman ★ 1.1k
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0
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3.2k
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Comment: Comment: How can I find the keys from a dictionary in a DNA sequence?
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
4
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1
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7.7k
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Answer: A: Extract common differentially expressed genes (DEGs) of different data sets. (Mi
9.7 years ago by David Fredman ★ 1.1k
2
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0
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5.5k
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Answer: Answer: RNA-seq GC content Bimodal distribution
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
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1
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2.5k
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Answer: A: miRNA -identification animal
9.7 years ago by David Fredman ★ 1.1k
1
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1
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7.0k
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Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
10
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0
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Answer: Answer: Best tools for circular genome visualization?
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
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0
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Comment: C: how to calculate p-value when the a sample has one value and the other sample h
9.7 years ago by David Fredman ★ 1.1k
0
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0
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5.6k
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Comment: C: Database for finding SNPs (Mutation-deletion/SNPs) In the promotor region of any
9.7 years ago by David Fredman ★ 1.1k
1
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1
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7.0k
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Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
1
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0
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8.6k
views
Answer: Answer: how to calculate p-value when the a sample has one value and the other sample h
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
1
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1
reply
7.0k
views
Comment: Comment: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 1.1k
3
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1
reply
2.3k
views
Answer: Answer: R graphs without bar
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
3
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1
reply
5.3k
views
Answer: Answer: Counting sense reads in bacterial paired-end RNA-seq data
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
2
votes
1
reply
5.6k
views
Answer: Answer: Database for finding SNPs (Mutation-deletion/SNPs) In the promotor region of any
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
0
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0
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4.6k
views
Comment: Comment: Biomart R package - help writing biomart results into existing file.
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
5
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1
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4.6k
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Answer: Answer: Biomart R package - help writing biomart results into existing file.
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
3
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1
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2.0k
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Answer: A: How to sort PDB name
9.8 years ago by David Fredman ★ 1.1k
1
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1
reply
7.0k
views
Answer: Answer: Gene_short_name missing in CuffDiff output (or how to retrieve it?)
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
0
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0
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3.1k
views
Answer: Answer: Identifying closest homologue of a protein sequence
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
2
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1
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5.0k
views
Answer: Answer: ncRNA Vs miRNA
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.1k
23
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3
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50k
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Answer: Answer: TCGA: What are mRNA expression z-scores? Does TCGA have mRNA expression from con
updated 3.0 years ago by 43k • written 9.8 years ago by ★ 1.1k
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