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0
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replies
277
views
How to map human variant to correspoding knock-allele in mouse
HMDC
mouse
MGI
functional_assay
knock-in
14 months ago by
Damianos P. Melidis
▴ 40
1
vote
1
reply
3.0k
views
Answer:
A: ACMG assignment tools
16 months ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
552
views
Answer:
A: Getting position of features of chromosomes
17 months ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
551
views
Curated annotation files for human mutation hotspots
mutation
hotspot
annotation
human
updated 17 months ago by
Biostar
20 • written 18 months ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
601
views
Comment:
A: VEP coordinates do not result to same sequence as ref sequence in gsvar file
18 months ago by
Damianos P. Melidis
▴ 40
3
votes
2
replies
601
views
VEP coordinates do not result to same sequence as ref sequence in gsvar file
VEP
pyensembl
deletion
GRCh37
18 months ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
408
views
How to extract start codon position when start codon annotation does not exists
pyensembl
start_codon
coding_sequence
GRCh37
19 months ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
847
views
Comment:
C: Extracting FILTER field from gnomAD vcf file
20 months ago by
Damianos P. Melidis
▴ 40
2
votes
2
replies
847
views
Extracting FILTER field from gnomAD vcf file
vcf
PyVCF
gnomAD
20 months ago by
Damianos P. Melidis
▴ 40
1
vote
0
replies
2.5k
views
Answer:
A: Find common entries between VCF and ClinVar VCF
21 months ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
1.8k
views
Comment:
C: How to use entrezpy and Biopython Entrez libraries to access ClinVar data from
23 months ago by
Damianos P. Melidis
▴ 40
0
votes
1
reply
1.8k
views
Comment:
C: How to use entrezpy and Biopython Entrez libraries to access ClinVar data from
23 months ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
1.8k
views
Comment:
C: How to use entrezpy and Biopython Entrez libraries to access ClinVar data from
23 months ago by
Damianos P. Melidis
▴ 40
2
votes
6
replies
1.8k
views
How to use entrezpy and Biopython Entrez libraries to access ClinVar data from genomic position of variant
entrezpy
ClinVar
Python3
BioPython
Entrez
24 months ago by
Damianos P. Melidis
▴ 40
3
votes
4
replies
605
views
How to select pairs to have a significant sample for similarity
similarity
gene ontology
sampling pairs
updated 2.6 years ago by
Biostar
20 • written 2.7 years ago by
Damianos P. Melidis
▴ 40
0
votes
1
reply
605
views
Comment:
C: How to select pairs to have a significant sample for similarity
2.7 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
465
views
Does ParentChildTreeFile.txt of Interpro has a specific tree format?
interpro
ParentChild
tree_format
updated 2.8 years ago by
Biostar
20 • written 2.8 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
469
views
Retrieving similarity of Interpro domains
interpro
meta-data
2.8 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
599
views
Answer:
A: Automatically retrieving interpro domain information ( to combine with phylogent
2.8 years ago by
Damianos P. Melidis
▴ 40
0
votes
1
reply
7.2k
views
Comment:
Comment: snpEFF chr not found error bacterial genome
updated 3 months ago by
Ram
36k • written 3.1 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
442
views
Calculate the SNP effect on binding site and RNA fold for Bacteria
SNP
Bacteria
RNA_fold
binding_site
3.1 years ago by
Damianos P. Melidis
▴ 40
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