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single cell sequencing data doublets removal tools selection
sequencing
updated 3.0 years ago by ★ 1.9k • written 4.9 years ago by ▴ 350
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Answer: A: How to convert columns to rows(seperated by comma) in Python(or R,linux)
3.3 years ago by shoujun.gu ▴ 350
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6.4k
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Comment: C: Result of scanpy tools rank_genes_groups
4.0 years ago by shoujun.gu ▴ 350
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6.4k
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Comment: C: Result of scanpy tools rank_genes_groups
4.0 years ago by shoujun.gu ▴ 350
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6.4k
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Comment: C: Result of scanpy tools rank_genes_groups
4.0 years ago by shoujun.gu ▴ 350
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6.1k
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Comment: C: about batch correction in scRNA-seq
4.0 years ago by shoujun.gu ▴ 350
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Comment: C: Seurat FeaturePlot: highlight only cells coexpressing several genes
4.0 years ago by shoujun.gu ▴ 350
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1.4k
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Comment: A: pwm matrix from txt file python
4.0 years ago by shoujun.gu ▴ 350
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Comment: C: Getting the cells from the clusters Seurat has found
4.3 years ago by shoujun.gu ▴ 350
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Comment: C: How to read vcf file in python?
4.3 years ago by shoujun.gu ▴ 350
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620
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Comment: C: Down regulated genes in sC-RANseq
4.3 years ago by shoujun.gu ▴ 350
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Comment: C: scRNA-seq analysis : the IDENTITY of the CLUSTERS across MULTIPLE EXPERIMENTS
4.3 years ago by shoujun.gu ▴ 350
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882
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Comment: C: Plotting - taking size and mean in consideration
4.3 years ago by shoujun.gu ▴ 350
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1.0k
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Comment: C: Support vector machine apply on gene expression data
4.3 years ago by shoujun.gu ▴ 350
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2.6k
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Comment: C: scRNA-seq and the batch effects
4.3 years ago by shoujun.gu ▴ 350
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1.3k
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Comment: C: Seurat Cluster Low MT Genes
4.3 years ago by shoujun.gu ▴ 350
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1.3k
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Comment: C: Seurat Cluster Low MT Genes
4.3 years ago by shoujun.gu ▴ 350
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1.1k
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Comment: C: Combining files based on chromosome and position next to each other - column vi
4.4 years ago by shoujun.gu ▴ 350
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1.8k
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Comment: C: Remove character from Fasta IDs -- python
4.4 years ago by shoujun.gu ▴ 350
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Comment: C: How to extract upstream and downstream sequence of a set of genes using python
4.4 years ago by shoujun.gu ▴ 350
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1.3k
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Comment: C: Need some help regarding Deep Learning/Python/TensorFlow
4.4 years ago by shoujun.gu ▴ 350
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2.3k
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Comment: C: gff3 header delimiter space or a tab
4.4 years ago by shoujun.gu ▴ 350
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2.3k
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Answer: A: gff3 header delimiter space or a tab
4.4 years ago by shoujun.gu ▴ 350
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1.2k
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Comment: C: deep learning predict gene expression
4.5 years ago by shoujun.gu ▴ 350
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729
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Answer: C: How to grab a column out of pandas data frame for encoding
4.5 years ago by shoujun.gu ▴ 350
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2.0k
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Comment: C: Algorithm for clustering single cells based on SNPs?
4.5 years ago by shoujun.gu ▴ 350
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Comment: C: What to think about when treating scRNA-Seq data as bulk RNA-Seq data
4.5 years ago by shoujun.gu ▴ 350
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1.5k
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Comment: C: plot principal component analysis: how to improve the graphics
4.5 years ago by shoujun.gu ▴ 350
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921
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Comment: C: R loop and other languages
4.5 years ago by shoujun.gu ▴ 350
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614
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Comment: C: Question any limit number of posts to download from API?
4.5 years ago by shoujun.gu ▴ 350
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2.0k
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Comment: C: PCA plot interpretation from scRNA data set
4.5 years ago by shoujun.gu ▴ 350
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3.6k
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Comment: C: Does Harmony batch correction for scRNA-seq require the same populations to be p
4.5 years ago by shoujun.gu ▴ 350
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2.0k
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Comment: C: PCA plot interpretation from scRNA data set
4.5 years ago by shoujun.gu ▴ 350
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1.6k
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Comment: C: concat fasta sequences based on some common header string
4.5 years ago by shoujun.gu ▴ 350
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1.4k
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Comment: C: the gtf file for cow
4.5 years ago by shoujun.gu ▴ 350
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1.4k
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Comment: C: the gtf file for cow
4.5 years ago by shoujun.gu ▴ 350
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1.4k
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Comment: C: the gtf file for cow
4.5 years ago by shoujun.gu ▴ 350
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1.9k
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Comment: C: Is there any statistical test for comparison of two lists of proteins ?
4.5 years ago by shoujun.gu ▴ 350
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6.4k
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Comment: C: TPM or FPKM for single cell RNA seq experiment ?
4.5 years ago by shoujun.gu ▴ 350
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4.0k
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Comment: C: Transcript vs. Gene TPM counts?
4.5 years ago by shoujun.gu ▴ 350
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1.1k
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Comment: C: Which pipeline is better for the pre-processing of the single-cell transcriptomi
4.5 years ago by shoujun.gu ▴ 350
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1.7k
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Comment: C: Get original format information from SRA metadata
4.5 years ago by shoujun.gu ▴ 350
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2.0k
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Comment: C: Examination of data matrix from CITE-seq-counts
4.5 years ago by shoujun.gu ▴ 350
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1.9k
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Comment: C: How to create a dna database that can be analyze with R ?
4.5 years ago by shoujun.gu ▴ 350
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1
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2.0k
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Comment: C: Examination of data matrix from CITE-seq-counts
4.5 years ago by shoujun.gu ▴ 350
4
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2
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6.1k
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Answer: A: about batch correction in scRNA-seq
updated 4.5 years ago by 141k • written 4.5 years ago by ▴ 350
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4.1k
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Comment: C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.5 years ago by shoujun.gu ▴ 350
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1.5k
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Comment: C: Importing EBI Single Cell Expression Atlas Data into Seurat
4.5 years ago by shoujun.gu ▴ 350
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1
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4.1k
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Answer: A: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.5 years ago by shoujun.gu ▴ 350
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0
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4.1k
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Comment: C: [Seurat] Looking into differential gene expression between specific groups of tw
4.5 years ago by shoujun.gu ▴ 350
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