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Answer: Answer: Bulk RNAseq with cell type deconvolution?
2.1 years ago by theodore.killian ▴ 30
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574
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How to access WGS files on TCGA for melanoma/SKCM
WGS circDNA TCGA
2.6 years ago by theodore.killian ▴ 30
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1.4k
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Comment: Comment: clusterProfiler won't read gene list
2.6 years ago by theodore.killian ▴ 30
2
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4
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3.8k
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6 follow
Gene correlation with single cell data?
RNA-Seq gene
updated 4 months ago by • 0 • written 3.1 years ago by ▴ 30
1
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2
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3.7k
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Using filtered_feature_bc_matrix for scRNAseq samples
rna-seq single-cell
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 30
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0
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770
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Comment: C: Using bulk RNAseq GSEA methods on single cel RNAseq results?
3.4 years ago by theodore.killian ▴ 30
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2
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770
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Using bulk RNAseq GSEA methods on single cel RNAseq results?
RNA-Seq
3.4 years ago by theodore.killian ▴ 30
0
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3
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1.4k
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clusterProfiler won't read gene list
gsea software error clusterProfiler
2.6 years ago by theodore.killian ▴ 30
0
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0
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684
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Comment: C: retain UMIs when converting bam to vcf file
3.6 years ago by theodore.killian ▴ 30
0
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2
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684
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retain UMIs when converting bam to vcf file
vcf bam RNA-Seq sequencing
updated 3.6 years ago by 14k • written 3.6 years ago by ▴ 30
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0
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570
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Efficiently obtaining genomic transcript levels of thousands of patient samples by cancer types
cancer RNA-Seq
3.6 years ago by theodore.killian ▴ 30
2
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1
reply
665
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Which reference genome file is correct?
RNA-Seq alignment assembly genome
updated 3.6 years ago by 142k • written 3.6 years ago by ▴ 30
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1
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1.2k
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Comment: C: Variant Calling scRNA-seq data for KRAS mutations
3.6 years ago by theodore.killian ▴ 30
3
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6
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1.2k
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Variant Calling scRNA-seq data for KRAS mutations
rna-seq snp
3.6 years ago by theodore.killian ▴ 30
0
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1
reply
586
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Why don't all GOIDs and all ENTEZIDs appear in db query?
R
4.1 years ago by theodore.killian ▴ 30
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1
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1.0k
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mapIDs function not obtaining all GOIDs for organism
R go RNA-Seq
4.1 years ago by theodore.killian ▴ 30
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0
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1.4k
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Answer: A: Msc in bioinformatics at Gent University
4.9 years ago by theodore.killian ▴ 30
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1
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3.3k
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Comment: A: Is computing TPM from read count from DEseq2 count matrix necessary?
4.9 years ago by theodore.killian ▴ 30
2
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3
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3.3k
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Is computing TPM from read count from DEseq2 count matrix necessary?
RNA-Seq R gene
4.9 years ago by theodore.killian ▴ 30
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