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2
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416
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Answer: Answer: Subset a GAM (graph alignment) file
3 months ago by glenn.hickey ▴ 550
1
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0
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1.3k
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Answer: Answer: vg call vs vg surject
16 months ago by glenn.hickey ▴ 550
1
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1
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823
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Answer: Answer: vg call is time consuming
18 months ago by glenn.hickey ▴ 550
0
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1
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2.5k
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Answer: Answer: need interpretations for the vg call output
22 months ago by glenn.hickey ▴ 550
1
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0
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1.7k
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Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
22 months ago by glenn.hickey ▴ 550
1
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0
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783
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Answer: Answer: Issues while installing VG
23 months ago by glenn.hickey ▴ 550
0
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0
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2.0k
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
23 months ago by glenn.hickey ▴ 550
2
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1
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998
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Answer: Answer: vg call coverage/suppport
23 months ago by glenn.hickey ▴ 550
0
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1
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2.0k
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
23 months ago by glenn.hickey ▴ 550
1
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0
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951
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Answer: Answer: How to change the output reference for vg giraffe BAM output
2.1 years ago by glenn.hickey ▴ 550
2
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0
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1.1k
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Comment: Comment: Can vg stats -a be used on a bam file?
2.1 years ago by glenn.hickey ▴ 550
2
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3
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2.5k
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Answer: Answer: How to identify which genome the variations in the pan-genome graph originate fr
2.1 years ago by glenn.hickey ▴ 550
1
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1
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2.7k
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Comment: Comment: Speed up vg call ?
2.1 years ago by glenn.hickey ▴ 550
1
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1
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2.7k
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Comment: Comment: Speed up vg call ?
2.2 years ago by glenn.hickey ▴ 550
2
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0
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769
views
Answer: Answer: Has anyone tried a combination of vg and cactus
2.2 years ago by glenn.hickey ▴ 550
2
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1
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2.3k
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Answer: Answer: population-level stratagy of vg call
2.2 years ago by glenn.hickey ▴ 550
1
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0
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2.1k
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Comment: Comment: vg map time consuming
2.2 years ago by glenn.hickey ▴ 550
0
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0
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1.8k
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Answer: Answer: unable to find most of SVs in constructed graph.vg
2.2 years ago by glenn.hickey ▴ 550
0
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1
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1.8k
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Answer: Answer: unable to find most of SVs in constructed graph.vg
2.2 years ago by glenn.hickey ▴ 550
2
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1
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1.8k
views
Answer: Answer: unable to find most of SVs in constructed graph.vg
2.2 years ago by glenn.hickey ▴ 550
2
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0
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2.7k
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Answer: Answer: Speed up vg call ?
2.6 years ago by glenn.hickey ▴ 550
1
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0
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1.2k
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Answer: Answer: Using VG to extract path sequences/sub-sequences
2.6 years ago by glenn.hickey ▴ 550
1
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0
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1.1k
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Answer: Answer: vg sort gam file by read name
2.6 years ago by glenn.hickey ▴ 550
2
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1
reply
4.5k
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Answer: Answer: vg augment/call - Excessively high memory usage for some chromosomes
2.6 years ago by glenn.hickey ▴ 550
1
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1
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3.8k
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Answer: Answer: Using VG to genotype a GAM using a graph constructed from GFA
4.0 years ago by glenn.hickey ▴ 550
0
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1
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1.5k
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Answer: Answer: Vg Call, not detecting SV due to soft-clipping
4.4 years ago by glenn.hickey ▴ 550
1
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1
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1.7k
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Answer: Answer: Identify coordinates from the VCF generated from Vg call
4.4 years ago by glenn.hickey ▴ 550
1
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0
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1.1k
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Answer: Answer: cannot see variations on graph image
4.5 years ago by glenn.hickey ▴ 550
2
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0
replies
1.3k
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Answer: A: Handling of Reverse Strand in GAM file
4.7 years ago by glenn.hickey ▴ 550
1
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0
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1.8k
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Answer: A: empty vcf from vg call
4.7 years ago by glenn.hickey ▴ 550
1
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0
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1.3k
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Answer: A: Issue on vg call order of paths
4.7 years ago by glenn.hickey ▴ 550
1
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0
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1.7k
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Answer: A: vg call has very different variant number between xg and hg
4.7 years ago by glenn.hickey ▴ 550
1
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0
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1.6k
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Answer: A: Whole genome alignment graph building
5.0 years ago by glenn.hickey ▴ 550
1
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0
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1.7k
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Answer: A: Merge multiple vcfs vgtools
updated 5.1 years ago by 45k • written 5.1 years ago by ▴ 550
0
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0
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1.7k
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Answer: A: Merge multiple vcfs vgtools
5.1 years ago by glenn.hickey ▴ 550
0
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0
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4.5k
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Comment: C: GAF format from vg
5.1 years ago by glenn.hickey ▴ 550
2
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1
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2.9k
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Answer: A: Vg call in a specific region
5.2 years ago by glenn.hickey ▴ 550
0
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0
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1.7k
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Answer: A: vg deconstruct with path sizes
5.2 years ago by glenn.hickey ▴ 550
0
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0
replies
1.0k
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Answer: A: How can i use several samples of resequencing data to get a visualize paths
5.2 years ago by glenn.hickey ▴ 550
2
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1
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2.5k
views
Answer: A: Converting gam to gaf
5.3 years ago by glenn.hickey ▴ 550
1
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0
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1.4k
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Answer: A: vg map with long assembled contigs
5.3 years ago by glenn.hickey ▴ 550
1
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0
replies
2.5k
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Comment: A: passing a third-party GFA to vg tools
5.3 years ago by glenn.hickey ▴ 550
2
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1
reply
1.9k
views
Answer: A: Merging .gam files
5.3 years ago by glenn.hickey ▴ 550
0
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0
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1.1k
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Answer: A: vg sv calling
5.5 years ago by glenn.hickey ▴ 550
0
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0
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2.2k
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Answer: A: vg docker image
5.5 years ago by glenn.hickey ▴ 550
0
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0
replies
1.2k
views
Answer: A: How do I deal with duplicate reads when using vg to analyse WGS data?
5.6 years ago by glenn.hickey ▴ 550
1
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1
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2.5k
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Answer: A: Segmentation fault (core dumped) during vg surject
5.6 years ago by glenn.hickey ▴ 550
1
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0
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1.0k
views
Answer: A: Edit distance of an alignment
5.6 years ago by glenn.hickey ▴ 550
1
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0
replies
1.7k
views
Answer: A: Extracting specific regions(ex, chr1:100-200 of hg38) from whole genome .vg and
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 550
0
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1
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1.8k
views
Answer: A: More haplotype threads than expected
5.7 years ago by glenn.hickey ▴ 550
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