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233
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Answer: Answer: vg call is time consuming
28 days ago by glenn.hickey ▴ 520
0
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1
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1.1k
views
Answer: Answer: need interpretations for the vg call output
5 months ago by glenn.hickey ▴ 520
1
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0
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724
views
Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
5 months ago by glenn.hickey ▴ 520
1
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0
replies
382
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Answer: Answer: Issues while installing VG
5 months ago by glenn.hickey ▴ 520
0
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0
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768
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
6 months ago by glenn.hickey ▴ 520
2
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1
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514
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Answer: Answer: vg call coverage/suppport
6 months ago by glenn.hickey ▴ 520
0
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1
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768
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Answer: Answer: Lack of correspondance of GFA node IDs to giraffe/call node IDs
6 months ago by glenn.hickey ▴ 520
1
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0
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444
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Answer: Answer: How to change the output reference for vg giraffe BAM output
7 months ago by glenn.hickey ▴ 520
2
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0
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517
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Comment: Comment: Can vg stats -a be used on a bam file?
7 months ago by glenn.hickey ▴ 520
2
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3
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1.2k
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Answer: Answer: How to identify which genome the variations in the pan-genome graph originate fr
8 months ago by glenn.hickey ▴ 520
1
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1
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1.4k
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Comment: Comment: Speed up vg call ?
8 months ago by glenn.hickey ▴ 520
1
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1
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1.4k
views
Comment: Comment: Speed up vg call ?
8 months ago by glenn.hickey ▴ 520
2
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0
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467
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Answer: Answer: Has anyone tried a combination of vg and cactus
9 months ago by glenn.hickey ▴ 520
2
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1
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1.1k
views
Answer: Answer: population-level stratagy of vg call
9 months ago by glenn.hickey ▴ 520
1
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0
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969
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Comment: Comment: vg map time consuming
9 months ago by glenn.hickey ▴ 520
0
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0
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944
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Answer: Answer: unable to find most of SVs in constructed graph.vg
9 months ago by glenn.hickey ▴ 520
0
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1
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944
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Answer: Answer: unable to find most of SVs in constructed graph.vg
9 months ago by glenn.hickey ▴ 520
2
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1
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944
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Answer: Answer: unable to find most of SVs in constructed graph.vg
10 months ago by glenn.hickey ▴ 520
2
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0
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1.4k
views
Answer: Answer: Speed up vg call ?
13 months ago by glenn.hickey ▴ 520
1
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0
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626
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Answer: Answer: Using VG to extract path sequences/sub-sequences
13 months ago by glenn.hickey ▴ 520
1
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0
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649
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Answer: Answer: vg sort gam file by read name
13 months ago by glenn.hickey ▴ 520
2
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1
reply
2.4k
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Answer: Answer: vg augment/call - Excessively high memory usage for some chromosomes
13 months ago by glenn.hickey ▴ 520
1
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1
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2.2k
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Answer: Answer: Using VG to genotype a GAM using a graph constructed from GFA
2.6 years ago by glenn.hickey ▴ 520
0
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1
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925
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Answer: Answer: Vg Call, not detecting SV due to soft-clipping
3.0 years ago by glenn.hickey ▴ 520
1
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1
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1.1k
views
Answer: Answer: Identify coordinates from the VCF generated from Vg call
3.0 years ago by glenn.hickey ▴ 520
1
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0
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761
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Answer: Answer: cannot see variations on graph image
3.0 years ago by glenn.hickey ▴ 520
2
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0
replies
923
views
Answer: A: Handling of Reverse Strand in GAM file
3.3 years ago by glenn.hickey ▴ 520
1
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0
replies
1.2k
views
Answer: A: empty vcf from vg call
3.3 years ago by glenn.hickey ▴ 520
1
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0
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946
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Answer: A: Issue on vg call order of paths
3.3 years ago by glenn.hickey ▴ 520
1
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0
replies
1.1k
views
Answer: A: vg call has very different variant number between xg and hg
3.3 years ago by glenn.hickey ▴ 520
1
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0
replies
1.2k
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Answer: A: Whole genome alignment graph building
3.5 years ago by glenn.hickey ▴ 520
1
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0
replies
1.2k
views
Answer: A: Merge multiple vcfs vgtools
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 520
0
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0
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1.2k
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Answer: A: Merge multiple vcfs vgtools
3.7 years ago by glenn.hickey ▴ 520
0
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0
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3.1k
views
Comment: C: GAF format from vg
3.7 years ago by glenn.hickey ▴ 520
2
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1
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2.1k
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Answer: A: Vg call in a specific region
3.8 years ago by glenn.hickey ▴ 520
0
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0
replies
1.1k
views
Answer: A: vg deconstruct with path sizes
3.8 years ago by glenn.hickey ▴ 520
0
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0
replies
709
views
Answer: A: How can i use several samples of resequencing data to get a visualize paths
3.8 years ago by glenn.hickey ▴ 520
2
votes
1
reply
1.5k
views
Answer: A: Converting gam to gaf
3.8 years ago by glenn.hickey ▴ 520
1
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0
replies
982
views
Answer: A: vg map with long assembled contigs
3.8 years ago by glenn.hickey ▴ 520
1
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0
replies
1.9k
views
Comment: A: passing a third-party GFA to vg tools
3.8 years ago by glenn.hickey ▴ 520
2
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1
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1.3k
views
Answer: A: Merging .gam files
3.8 years ago by glenn.hickey ▴ 520
0
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0
replies
849
views
Answer: A: vg sv calling
4.1 years ago by glenn.hickey ▴ 520
0
votes
0
replies
1.5k
views
Answer: A: vg docker image
4.1 years ago by glenn.hickey ▴ 520
0
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0
replies
851
views
Answer: A: How do I deal with duplicate reads when using vg to analyse WGS data?
4.2 years ago by glenn.hickey ▴ 520
1
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1
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1.7k
views
Answer: A: Segmentation fault (core dumped) during vg surject
4.2 years ago by glenn.hickey ▴ 520
1
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0
replies
751
views
Answer: A: Edit distance of an alignment
4.2 years ago by glenn.hickey ▴ 520
1
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0
replies
1.3k
views
Answer: A: Extracting specific regions(ex, chr1:100-200 of hg38) from whole genome .vg and
updated 4.3 years ago by 35k • written 4.3 years ago by ▴ 520
0
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1
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1.1k
views
Answer: A: More haplotype threads than expected
4.3 years ago by glenn.hickey ▴ 520
2
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1
reply
1.0k
views
Answer: A: How to determine haplotypes from variation graphs
4.3 years ago by glenn.hickey ▴ 520
1
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0
replies
1.4k
views
Answer: A: VG view command hangs with no result (VG Toolkit)
4.3 years ago by glenn.hickey ▴ 520
53 results • Page 1 of 2
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