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How to Analyze 10x Genomics Data with Full-Length R1 and R2 (100bp Each)?
10x-Genomics UMI single-cell RNA-Seq CellRanger
updated 6 months ago by 153k • written 6 months ago by ▴ 30
0
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1.2k
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Comment: Comment: UMI collapsing in single cell
8 months ago by zbidav ▴ 30
2
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3
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1.2k
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UMI collapsing in single cell
10x UMI single-cell collapse
updated 8 months ago by 22k • written 8 months ago by ▴ 30
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0
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4.9k
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Comment: Comment: Separate single cell BAM file by the cell barcode
11 months ago by zbidav ▴ 30
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0
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1.6k
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Comment: Comment: Multiple same UMI's mapped to the same cell with different sequence
14 months ago by zbidav ▴ 30
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1
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1.6k
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Comment: Comment: Multiple same UMI's mapped to the same cell with different sequence
14 months ago by zbidav ▴ 30
5
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4
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1.6k
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Multiple same UMI's mapped to the same cell with different sequence
10x UMI BAM scRNAseq Barcode
14 months ago by zbidav ▴ 30
0
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1
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4.9k
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Comment: Comment: Separate single cell BAM file by the cell barcode
14 months ago by zbidav ▴ 30
0
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1
reply
4.9k
views
Comment: Comment: Separate single cell BAM file by the cell barcode
2.1 years ago by zbidav ▴ 30
0
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1
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4.9k
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Comment: Comment: Separate single cell BAM file by the cell barcode
2.1 years ago by zbidav ▴ 30
2
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8
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4.9k
views
Separate single cell BAM file by the cell barcode
BAM scRNAseq single-cell
updated 9 months ago by 153k • written 2.1 years ago by ▴ 30
7
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3
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1.2k
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Statistical test in the case of low replicate number in RNAseq analysis
replicate Statistics RNAseq low
updated 3.0 years ago by 2.9k • written 3.1 years ago by ▴ 30
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2
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3.5k
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Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
3.0 years ago by zbidav ▴ 30
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0
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2.8k
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Comment: Comment: Error: All columns in a tibble must be 1d or 2d objects:
3.2 years ago by zbidav ▴ 30
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0
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2.1k
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Comment: Comment: Demultiplexing RNAseq data with tag file and barcodes (single end)
3.2 years ago by zbidav ▴ 30
0
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6
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2.1k
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Demultiplexing RNAseq data with tag file and barcodes (single end)
RNAseq bash Demultiplexing zUMI
3.2 years ago by zbidav ▴ 30
0
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0
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2.1k
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Comment: Comment: Demultiplexing RNAseq data with tag file and barcodes (single end)
3.2 years ago by zbidav ▴ 30
0
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1
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2.1k
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Comment: Comment: Demultiplexing RNAseq data with tag file and barcodes (single end)
3.2 years ago by zbidav ▴ 30
2
votes
1
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788
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Extracting specific regions from bam file as FASTA format
samtools fasta
updated 3.9 years ago by 153k • written 3.9 years ago by ▴ 30
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