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2
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881
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Answer: Answer: The nightmare of coordinate systems
14 months ago by cmdcolin ★ 3.2k
2
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0
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344
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Answer: Answer: Duplicate chromosome location columns in a bed file makes problem in importing t
14 months ago by cmdcolin ★ 3.2k
0
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1
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10k
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Answer: Answer: Tabix With Gff3
15 months ago by cmdcolin ★ 3.2k
0
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1
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1.0k
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Answer: Answer: How can I find a DNA sequence that codes for a protein from a large FASTQ file?
16 months ago by cmdcolin ★ 3.2k
1
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0
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1.7k
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Answer: Answer: Software to draw protein domains of proteins
16 months ago by cmdcolin ★ 3.2k
0
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1
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1.3k
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Answer: Answer: sliding windows over genome
16 months ago by cmdcolin ★ 3.2k
3
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1
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606
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Answer: Answer: How can i insert a "remove duplicates" command in a samtools script?
16 months ago by cmdcolin ★ 3.2k
2
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0
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764
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Answer: Answer: Using Tabix to download region of interest from eQTL catalogue
17 months ago by cmdcolin ★ 3.2k
1
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0
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1.3k
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Answer: Answer: Change chromosome notation in bam file
18 months ago by cmdcolin ★ 3.2k
3
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1
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3.2k
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Answer: Answer: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
18 months ago by cmdcolin ★ 3.2k
0
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0
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536
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Answer: Answer: Reads mapping
19 months ago by cmdcolin ★ 3.2k
1
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1
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966
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Answer: Answer: Uploading VCF track onto JBrowse 1.16.8
21 months ago by cmdcolin ★ 3.2k
1
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1
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524
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Answer: Answer: how to find the expression of an inserted genes?
22 months ago by cmdcolin ★ 3.2k
3
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1
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3.8k
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Answer: Answer: Genome Browser suggestions
22 months ago by cmdcolin ★ 3.2k
3
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0
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1.1k
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Answer: Answer: Visualization tools for split read / structural variants
22 months ago by cmdcolin ★ 3.2k
1
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0
replies
802
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Answer: Answer: Translating thinks like (c.2450-118A>G) to a position in IGV
23 months ago by cmdcolin ★ 3.2k
2
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2
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901
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Answer: Answer: Jbrowse reference sequence issue
23 months ago by cmdcolin ★ 3.2k
4
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1
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1.9k
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Answer: Answer: Structural variant breakend
2.1 years ago by cmdcolin ★ 3.2k
2
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1
reply
1.2k
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Answer: Answer: genome browser to check SNP genome build
2.1 years ago by cmdcolin ★ 3.2k
1
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1
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1.5k
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Answer: Answer: How to infer segment direction from vcf
2.2 years ago by cmdcolin ★ 3.2k
2
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1
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2.3k
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Answer: Answer: How to find tandem duplications pattern in a DNA sequence
2.4 years ago by cmdcolin ★ 3.2k
0
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0
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744
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Answer: A: Optimized genome browser
2.6 years ago by cmdcolin ★ 3.2k
3
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1
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2.8k
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Answer: Answer: Jbrowse: importance of draw-basepair-track.pl
updated 18 months ago by 40k • written 8.7 years ago by ★ 3.2k
0
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0
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1.0k
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Answer: A: Does 1000 genomes have a flat file with allele frequencies for each site anywher
3.0 years ago by cmdcolin ★ 3.2k
5
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0
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2.7k
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Answer: A: Why does bioinformatics use a special format like a BAM file instead of a databa
3.1 years ago by cmdcolin ★ 3.2k
0
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0
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6.1k
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Answer: A: Merge two bigwig(+/- strand) files from RNA-seq
3.4 years ago by cmdcolin ★ 3.2k
0
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0
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2.0k
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Answer: A: How To Fetch Exon Sequence From Genomic Coordinates
3.6 years ago by cmdcolin ★ 3.2k
2
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1
reply
19k
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Answer: A: Other Genomic Viewer Like Igv
3.7 years ago by cmdcolin ★ 3.2k
1
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1
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1.3k
views
Answer: A: Displaying structural variants with JBrowse
3.9 years ago by cmdcolin ★ 3.2k
0
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0
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4.5k
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Answer: A: Does anybody know how to do a local install of samtools on centos without using
3.9 years ago by cmdcolin ★ 3.2k
1
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2
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3.4k
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Answer: A: Linking Jbrowse to Galaxy/Taverna
updated 3.9 years ago by 40k • written 8.9 years ago by ★ 3.2k
2
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0
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6.9k
views
Answer: A: Dbsnp132 1000Genomes Vcf File Info Field: Bitfield Structure
updated 4.0 years ago by 40k • written 9.2 years ago by ★ 3.2k
2
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2
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51k
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Answer: Answer: How Can I Convert Bam/Sam To Wiggle
updated 6 months ago by 40k • written 9.6 years ago by ★ 3.2k
12
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2
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20k
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Answer: A: Piping bowtie2 output directly into BAM
4.5 years ago by cmdcolin ★ 3.2k
1
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1
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1.5k
views
Answer: A: What causes Linear relations on MAplots?
4.5 years ago by cmdcolin ★ 3.2k
4
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1
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1.3k
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Answer: A: Plotting MBD-seq results
4.6 years ago by cmdcolin ★ 3.2k
1
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0
replies
15k
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Answer: A: Extract reads within given region, and their mates
4.6 years ago by cmdcolin ★ 3.2k
2
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1
reply
3.7k
views
Answer: A: Extract read sequence from BAM files depending on the alignment coordinates
4.6 years ago by cmdcolin ★ 3.2k
2
votes
0
replies
2.9k
views
Answer: A: Finding Gene Name Synonyms
4.7 years ago by cmdcolin ★ 3.2k
0
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1
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4.0k
views
Answer: A: how to extract per base information (in coverage track of IGV) from .bam file
4.7 years ago by cmdcolin ★ 3.2k
0
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0
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4.7k
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Answer: A: samtools covert to bam, sort and index all gz.sam
4.7 years ago by cmdcolin ★ 3.2k
1
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0
replies
1.6k
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Answer: A: strand identification from sam file
4.7 years ago by cmdcolin ★ 3.2k
1
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0
replies
1.1k
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Answer: A: Is there a standard file format for anchored contigs?
4.7 years ago by cmdcolin ★ 3.2k
1
vote
0
replies
3.8k
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Answer: A: Full genome phyloP scores from UCSC Browser
4.8 years ago by cmdcolin ★ 3.2k
0
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0
replies
5.0k
views
Answer: A: Failed to populate reference for id 1?
4.8 years ago by cmdcolin ★ 3.2k
0
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0
replies
6.2k
views
Answer: A: Extracting Read Pairs From Region So That All Pairs Remain Intact
4.9 years ago by cmdcolin ★ 3.2k
3
votes
0
replies
24k
views
Answer: A: How To Convert Blast Results To Gff
updated 5.0 years ago by 40k • written 7.7 years ago by ★ 3.2k
2
votes
1
reply
3.1k
views
Answer: A: How do I filter my VCF file to only include certain coordinates from a BED file?
5.1 years ago by cmdcolin ★ 3.2k
4
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1
reply
2.0k
views
Answer: A: parsing gff3 file
5.1 years ago by cmdcolin ★ 3.2k
0
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1
reply
1.3k
views
Answer: A: How to customize the looks of dynamically generated tracks in jbrowse?
updated 5.1 years ago by 7.5k • written 5.2 years ago by ★ 3.2k
135 results • Page 2 of 3
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