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Answer: Answer: Error: ##fileformat=VCFv4.2 does not exist
21 months ago by sbstevenlee ▴ 480
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Comment: Comment: 012 matrix variation for multiple alleles
22 months ago by sbstevenlee ▴ 480
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2.2k
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Comment: Comment: 012 matrix variation for multiple alleles
22 months ago by sbstevenlee ▴ 480
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2.2k
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Comment: Comment: 012 matrix variation for multiple alleles
22 months ago by sbstevenlee ▴ 480
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2.2k
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Comment: Comment: 012 matrix variation for multiple alleles
22 months ago by sbstevenlee ▴ 480
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
2.2 years ago by sbstevenlee ▴ 480
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Answer: Answer: Generating Depth of Coverage files from vcf.
2.2 years ago by sbstevenlee ▴ 480
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Comment: Comment: Why isn't GWAS used in oncology?
2.2 years ago by sbstevenlee ▴ 480
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
2.3 years ago by sbstevenlee ▴ 480
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2.8k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
2.3 years ago by sbstevenlee ▴ 480
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2.8k
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Comment: Comment: Calling star alleles with PGx-POP on my VCF file
2.3 years ago by sbstevenlee ▴ 480
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2.8k
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Answer: Answer: Calling star alleles with PGx-POP on my VCF file
2.3 years ago by sbstevenlee ▴ 480
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1.5k
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
2.5 years ago by sbstevenlee ▴ 480
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1.5k
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
2.5 years ago by sbstevenlee ▴ 480
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1.5k
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Comment: Comment: If I need to repeatedly perform variant calling from BAM for single gene only, d
2.5 years ago by sbstevenlee ▴ 480
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6
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If I need to repeatedly perform variant calling from BAM for single gene only, do I really need entire reference FASTA?
variant-calling bam vcf bcftools fasta
2.5 years ago by sbstevenlee ▴ 480
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Answer: Answer: Missing data per site
2.5 years ago by sbstevenlee ▴ 480
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879
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Comment: Comment: Hierarchical clustering in r
2.6 years ago by sbstevenlee ▴ 480
2
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2
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1.7k
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Weird behavior of `--max-depth` argument from `bcftools mpileup` command when its value is too low
bcftools mpileup
updated 17 months ago by 44k • written 2.6 years ago by ▴ 480
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Answer: Answer: Weird behavior of `--max-depth` argument from `bcftools mpileup` command when it
2.6 years ago by sbstevenlee ▴ 480
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Answer: Answer: Vcf : remove variant absent in affected sample
2.6 years ago by sbstevenlee ▴ 480
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4.4k
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Answer: Answer: BCFtools allele frequency for specific population
2.6 years ago by sbstevenlee ▴ 480
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5.4k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
2.7 years ago by sbstevenlee ▴ 480
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Comment: Comment: Need help to read samples from PyVCF
2.7 years ago by sbstevenlee ▴ 480
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2.6k
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Answer: Answer: Need help to read samples from PyVCF
2.7 years ago by sbstevenlee ▴ 480
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759
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Answer: Answer: vcf file per-sample comparison in a region
2.7 years ago by sbstevenlee ▴ 480
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1
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1.6k
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Answer: Answer: Strange error when using gzip.open with a VCF file
2.7 years ago by sbstevenlee ▴ 480
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6.8k
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Comment: Comment: convert csv file to bed file
2.7 years ago by sbstevenlee ▴ 480
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6.8k
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Comment: Comment: convert csv file to bed file
2.7 years ago by sbstevenlee ▴ 480
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6.8k
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Answer: Answer: convert csv file to bed file
2.7 years ago by sbstevenlee ▴ 480
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Answer: Answer: Understanding haplotype notations (output from EAGLE2)
2.8 years ago by sbstevenlee ▴ 480
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2.5k
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Comment: Comment: Germline variant calling from BAM without reference
2.8 years ago by sbstevenlee ▴ 480
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2.5k
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Comment: Comment: Germline variant calling from BAM without reference
2.8 years ago by sbstevenlee ▴ 480
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4
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2.5k
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Germline variant calling from BAM without reference
vcf calling bam variant
2.8 years ago by sbstevenlee ▴ 480
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1.8k
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Answer: Answer: VCF using Python
2.8 years ago by sbstevenlee ▴ 480
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Answer: Answer: Finding variants common to subset of samples in multi-sample VCF
2.8 years ago by sbstevenlee ▴ 480
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3.8k
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Comment: Comment: Aspera Connect problem with "ascp: Taget address not available"
2.9 years ago by sbstevenlee ▴ 480
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2
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3.8k
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Aspera Connect problem with "ascp: Taget address not available"
ascp Aspera
2.9 years ago by sbstevenlee ▴ 480
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
2.9 years ago by sbstevenlee ▴ 480
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1
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5.5k
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Comment: Comment: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
2.9 years ago by sbstevenlee ▴ 480
2
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1
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2.2k
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Answer: Answer: 012 matrix variation for multiple alleles
2.9 years ago by sbstevenlee ▴ 480
1
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2
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1.5k
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Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBMCs"
scanpy
updated 2.9 years ago by 13k • written 2.9 years ago by ▴ 480
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Answer: Answer: Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBM
2.9 years ago by sbstevenlee ▴ 480
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1.3k
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Answer: Answer: vcftools 012 apparently is giving me wrong genotypes
3.0 years ago by sbstevenlee ▴ 480
2
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3.3k
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Answer: Answer: struggling in using bcftools to set variants to missing
3.0 years ago by sbstevenlee ▴ 480
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1.2k
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Answer: Answer: Shared variants
3.0 years ago by sbstevenlee ▴ 480
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774
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Answer: Answer: How to find differentially mutated genes between two groups of samples?
3.0 years ago by sbstevenlee ▴ 480
2
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2.0k
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Answer: Answer: Alelle frequency plot
3.0 years ago by sbstevenlee ▴ 480
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932
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Answer: Answer: fuc.pyvcf Attribute Error
3.0 years ago by sbstevenlee ▴ 480
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12k
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Answer: Answer: How to filter a VCF file with a list of CHR or contig IDs?
3.0 years ago by sbstevenlee ▴ 480
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