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questions
2
votes
0
replies
459
views
Heterozygous individuals and FastaAlternateReferenceMarker
GATK
FASTA
SNP
3.9 years ago by
gubrins
▴ 290
0
votes
1
reply
1.3k
views
Multisample VCF to FASTA
vcf
fasta
GATK
updated 4.0 years ago by
Kevin Blighe
88k • written 4.0 years ago by
gubrins
▴ 290
7
votes
5
replies
3.8k
views
quality check of bam files
gatk
bam
sam
quality
updated 4.0 years ago by
Pierre Lindenbaum
161k • written 4.0 years ago by
gubrins
▴ 290
2
votes
1
reply
929
views
SNP calling specific genes with GATK
gatk
vcf
target-capture sequencing
target capture
updated 4.0 years ago by
bruce.moran
▴ 960 • written 4.0 years ago by
gubrins
▴ 290
5
votes
4
replies
3.4k
views
Improve the speed of Haplotypecaller
gatk
vcf
bam
haplotypecaller
updated 4.0 years ago by
Pierre Lindenbaum
161k • written 4.0 years ago by
gubrins
▴ 290
4
votes
7
replies
2.9k
views
StrandBiasBySample error Haplotypecaller
haplotypecaller
gatk
strandbiasbysample
updated 4.0 years ago by
Pierre Lindenbaum
161k • written 4.0 years ago by
gubrins
▴ 290
0
votes
0
replies
1.3k
views
Phasing with Beagle
beagle
phasing
haplotypes
4.1 years ago by
gubrins
▴ 290
1
vote
2
replies
565
views
Regular coverage in target capture sequencing
target capture
targeting
coverage
4.1 years ago by
gubrins
▴ 290
6
votes
6
replies
2.1k
views
Coverage per gene
gene-coverage
bed
bedtools
updated 13 months ago by
Ram
43k • written 4.1 years ago by
gubrins
▴ 290
2
votes
4
replies
902
views
Coverage of target genes
coverage
target capture
target capturing
BAM
VCF
4.1 years ago by
gubrins
▴ 290
0
votes
4
replies
784
views
Target capture sequencing
target capture sequencing
targeted sequencing
4.1 years ago by
gubrins
▴ 290
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