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Comment: Comment: Filtering Multi-sample VCF file for all except one Genotype
1 day ago by Jeremy Leipzig 22k
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Comment: Comment: NGS forensics: how to know if data is fabricated
10 days ago by Jeremy Leipzig 22k
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551
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Comment: Comment: gvcf joint calling
11 days ago by Jeremy Leipzig 22k
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551
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Comment: Comment: gvcf joint calling
11 days ago by Jeremy Leipzig 22k
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272
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Comment: Comment: CombineGVCFs vs. MergeVcfs
23 days ago by Jeremy Leipzig 22k
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696
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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
29 days ago by Jeremy Leipzig 22k
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312
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Comment: Comment: Bioinformatics variant calling software
4 weeks ago by Jeremy Leipzig 22k
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239
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Comment: Comment: AUC=1, is it possible after lasso regression?
5 weeks ago by Jeremy Leipzig 22k
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462
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Comment: Comment: I can't add VAF from population for all of my variants from VCF file
8 weeks ago by Jeremy Leipzig 22k
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508
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Comment: Comment: Snakemake rule that runs an assessment for once after completing other previous
9 weeks ago by Jeremy Leipzig 22k
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508
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Comment: Comment: Snakemake rule that runs an assessment for once after completing other previous
9 weeks ago by Jeremy Leipzig 22k
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1.5k
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Comment: Comment: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
9 weeks ago by Jeremy Leipzig 22k
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508
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Comment: Comment: Snakemake rule that runs an assessment for once after completing other previous
9 weeks ago by Jeremy Leipzig 22k
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473
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Comment: Comment: Snakemake: how to define output from a dictionary according to wildcard
9 weeks ago by Jeremy Leipzig 22k
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258
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Comment: Comment: Resolution of ambiguous calls in germline vcf
9 weeks ago by Jeremy Leipzig 22k
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820
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
10 weeks ago by Jeremy Leipzig 22k
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820
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
11 weeks ago by Jeremy Leipzig 22k
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31k
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Comment: Comment: List of cloud genomics companies
11 weeks ago by Jeremy Leipzig 22k
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24k
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Comment: Comment: Difference between tSNE and PCA analysis
11 weeks ago by Jeremy Leipzig 22k
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454
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Comment: Comment: how to extract variants from the vcf.gz files linked below?
11 weeks ago by Jeremy Leipzig 22k
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31k
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Comment: Comment: List of cloud genomics companies
11 weeks ago by Jeremy Leipzig 22k
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0
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31k
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Comment: Comment: List of cloud genomics companies
11 weeks ago by Jeremy Leipzig 22k
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388
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Comment: Comment: Linear Mixed-Effects Model Coefficient Interpretation
12 weeks ago by Jeremy Leipzig 22k
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703
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Comment: Comment: difference betwween hail and plink
3 months ago by Jeremy Leipzig 22k
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421
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Comment: Comment: How to reference input variable in output section of rule of Snakemake rule
3 months ago by Jeremy Leipzig 22k
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474
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
3 months ago by Jeremy Leipzig 22k
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474
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Comment: Comment: 1000 Genome: Cause of duplicate variants with different genotypes
3 months ago by Jeremy Leipzig 22k
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576
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Comment: Comment: What tools exist for filtering hundreds of VCFs (and annotated into VCFs in txt
3 months ago by Jeremy Leipzig 22k
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419
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Comment: Comment: How quickly can an SRA submission proceed directly from S3
3 months ago by Jeremy Leipzig 22k
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419
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Comment: Comment: How quickly can an SRA submission proceed directly from S3
3 months ago by Jeremy Leipzig 22k
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828
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Comment: Comment: Isolating and extracting regions in VCF file
3 months ago by Jeremy Leipzig 22k
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733
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Comment: Comment: GIAB Benchmarking
3 months ago by Jeremy Leipzig 22k
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468
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Comment: Comment: Tool to Create Sequence Logo Plot with Indels or Alignment-Aware Position Freque
4 months ago by Jeremy Leipzig 22k
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2
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1.2k
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Comment: Comment: Problem with Mamba
4 months ago by Jeremy Leipzig 22k
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733
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Comment: Comment: Multiallelic variants when merging VCF's with GLnexus
4 months ago by Jeremy Leipzig 22k
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733
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Comment: Comment: Multiallelic variants when merging VCF's with GLnexus
4 months ago by Jeremy Leipzig 22k
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1.8k
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Comment: Comment: How to query 1000 genomes project VCF files for specific regions without downloa
4 months ago by Jeremy Leipzig 22k
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733
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Comment: Comment: Multiallelic variants when merging VCF's with GLnexus
4 months ago by Jeremy Leipzig 22k
3
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920
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Comment: Comment: Individual vs. joint call VCFs
4 months ago by Jeremy Leipzig 22k
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920
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Comment: Comment: Individual vs. joint call VCFs
4 months ago by Jeremy Leipzig 22k
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2.7k
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Comment: Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra
5 months ago by Jeremy Leipzig 22k
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316
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Comment: Comment: Bgen file not being opened by PRSice
5 months ago by Jeremy Leipzig 22k
1
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1
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943
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
6 months ago by Jeremy Leipzig 22k
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0
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913
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Comment: Comment: Isaac aligner V4 genome aligner questions
6 months ago by Jeremy Leipzig 22k
1
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0
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485
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Comment: Comment: How to find the Allele Number (AN) of a variant not reported on gnomAD
6 months ago by Jeremy Leipzig 22k
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1
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943
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
6 months ago by Jeremy Leipzig 22k
1
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1
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943
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
6 months ago by Jeremy Leipzig 22k
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1
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737
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Comment: Comment: Calculating ROC50 in R
6 months ago by Jeremy Leipzig 22k
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737
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Comment: Comment: Calculating ROC50 in R
6 months ago by Jeremy Leipzig 22k
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972
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Comment: Comment: N50 value of bacterial assembly is not half of total assembly size
6 months ago by Jeremy Leipzig 22k
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