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Comment: C: Automatically feeding a good mate inner distance to TopHat2
9.8 years ago by Devon Ryan 105k
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1
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4.0k
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Comment: C: Huge difference in BWA mapping times
9.8 years ago by Devon Ryan 105k
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2
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4.1k
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Comment: C: Normalization scheme to use for upstream sequences read count in (Chip-seq histo
9.8 years ago by Devon Ryan 105k
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4.0k
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Comment: C: Huge difference in BWA mapping times
9.8 years ago by Devon Ryan 105k
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6.0k
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Comment: C: Is there a limit to the p-value & q-value for cuffdiff gene_exp.diff?
9.8 years ago by Devon Ryan 105k
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2.4k
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Comment: C: Low methylation regions or non-methylation regions from WGBS dataset
9.8 years ago by Devon Ryan 105k
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4.1k
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Answer: Answer: Normalization scheme to use for upstream sequences read count in (Chip-seq histo
updated 3.4 years ago by 45k • written 9.8 years ago by 105k
3
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2.4k
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Answer: A: Low methylation regions or non-methylation regions from WGBS dataset
9.8 years ago by Devon Ryan 105k
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1
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3.4k
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Comment: C: chain files for mouse mm9 to ensembl version 75
9.8 years ago by Devon Ryan 105k
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1
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3.4k
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Comment: C: chain files for mouse mm9 to ensembl version 75
9.8 years ago by Devon Ryan 105k
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0
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21k
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Comment: C: edgeR: Correct pipeline for DE analysis with multiple conditions and batches
9.8 years ago by Devon Ryan 105k
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1
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21k
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Comment: C: edgeR: Correct pipeline for DE analysis with multiple conditions and batches
9.8 years ago by Devon Ryan 105k
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1.5k
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Comment: C: How to get specific genes in bed format where each exon is covered base by base?
9.8 years ago by Devon Ryan 105k
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2.7k
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Comment: C: Is there a way to output the single counts for every region with samtools?
9.8 years ago by Devon Ryan 105k
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1
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2.7k
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Comment: C: Is there a way to output the single counts for every region with samtools?
9.8 years ago by Devon Ryan 105k
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1
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2.7k
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Answer: A: samtools view -c
9.8 years ago by Devon Ryan 105k
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1
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7.7k
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Comment: C: TMM normalization for RNA seq data with three replicates (2 samples)
9.8 years ago by Devon Ryan 105k
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47k
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Comment: C: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
9.8 years ago by Devon Ryan 105k
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2
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3.5k
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Comment: C: CANEapp, a user-friendly application for automated next generation transcriptomi
9.9 years ago by Devon Ryan 105k
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1
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3.5k
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Comment: C: PhD student at University of Miami
9.9 years ago by Devon Ryan 105k
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8.0k
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Comment: C: Salvage barcode undetermined reads from Illumina HiSeq 2500 2 x 100 bp pair-ende
9.9 years ago by Devon Ryan 105k
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2.0k
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Answer: A: Aligning high depth data to short target sequence
9.9 years ago by Devon Ryan 105k
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14k
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Comment: C: How to properly merge multiple runs into one bam file ?
9.9 years ago by Devon Ryan 105k
2
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2
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2.7k
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Comment: C: Expression of target genes using SRA Dataset
9.9 years ago by Devon Ryan 105k
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2
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43k
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Comment: C: hg38 annotation file (gtf) UCSC format
9.9 years ago by Devon Ryan 105k
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4
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23k
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Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
9.9 years ago by Devon Ryan 105k
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8.0k
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Comment: C: Salvage barcode undetermined reads from Illumina HiSeq 2500 2 x 100 bp pair-ende
9.9 years ago by Devon Ryan 105k
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0
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4.7k
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Comment: C: How to identify bowtie2 unique mapping using sam flag value?
9.9 years ago by Devon Ryan 105k
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4.2k
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Comment: C: Scatter plot when there is a standard error for both axes
9.9 years ago by Devon Ryan 105k
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0
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22k
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Comment: C: HISAT2 command help
9.9 years ago by Devon Ryan 105k
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2
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22k
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Comment: C: HISAT2 command help
9.9 years ago by Devon Ryan 105k
7
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5
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22k
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Answer: A: HISAT2 command help
9.9 years ago by Devon Ryan 105k
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0
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3.9k
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Comment: C: Correlation between two expression matrices in blood and tumor
9.9 years ago by Devon Ryan 105k
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1
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3.9k
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Comment: C: Correlation between two expression matrices in blood and tumor
9.9 years ago by Devon Ryan 105k
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1
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3.9k
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Answer: A: Correlation between two expression matrices in blood and tumor
9.9 years ago by Devon Ryan 105k
1
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1
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1.9k
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Answer: A: single end miRNA analysis
9.9 years ago by Devon Ryan 105k
0
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0
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2.4k
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Comment: C: Error running cuffdiff using SAM generated from GSNAP/GMAP
9.9 years ago by Devon Ryan 105k
0
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1
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2.8k
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Comment: C: TP, FP, TN and FN in error correction reads
9.9 years ago by Devon Ryan 105k
0
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1
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2.8k
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Comment: C: TP, FP, TN and FN in error correction reads
9.9 years ago by Devon Ryan 105k
1
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1
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7.0k
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Comment: C: Bed file loading issues
9.9 years ago by Devon Ryan 105k
0
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0
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3.4k
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Comment: C: Tophat unable to produce accepted_hits.bam file for single end read data
9.9 years ago by Devon Ryan 105k
0
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1
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4.2k
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Comment: C: Scatter plot when there is a standard error for both axes
9.9 years ago by Devon Ryan 105k
0
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0
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9.7k
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Comment: C: RNAseq data and PAM50 method
9.9 years ago by Devon Ryan 105k
1
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1
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2.8k
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Answer: A: TP, FP, TN and FN in error correction reads
9.9 years ago by Devon Ryan 105k
4
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1
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4.2k
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Answer: A: Scatter plot when there is a standard error for both axes
9.9 years ago by Devon Ryan 105k
0
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1
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3.4k
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Comment: C: Tophat unable to produce accepted_hits.bam file for single end read data
9.9 years ago by Devon Ryan 105k
5
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0
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4.3k
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Answer: A: Mapping RNA-seq against genome
9.9 years ago by Devon Ryan 105k
1
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1
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3.9k
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Answer: A: TMM normalisation on a subtset of the data
9.9 years ago by Devon Ryan 105k
2
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1
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2.1k
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Comment: C: artifact/false peaks visible in wiggle files
9.9 years ago by Devon Ryan 105k
0
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1
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14k
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Comment: C: How to properly merge multiple runs into one bam file ?
9.9 years ago by Devon Ryan 105k
10,053 results • Page 103 of 202
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