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Answer: A: How to properly merge multiple runs into one bam file ?
9.9 years ago by Devon Ryan 105k
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Answer: A: Can we use the index file created for Bowtie on BWA alignment?
9.9 years ago by Devon Ryan 105k
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8.0k
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Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
9.9 years ago by Devon Ryan 105k
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5.4k
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Answer: A: best workflow for RNA data analysis without replications
9.9 years ago by Devon Ryan 105k
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3.1k
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Comment: C: DEXSeq for exon counting & package name for human?
9.9 years ago by Devon Ryan 105k
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3.1k
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Answer: A: DEXSeq for exon counting & package name for human?
9.9 years ago by Devon Ryan 105k
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2.4k
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Answer: A: MACS2 error in Galaxy
9.9 years ago by Devon Ryan 105k
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3.5k
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Answer: A: bowtie2 error in mapping pair ended sample
9.9 years ago by Devon Ryan 105k
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4.3k
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Comment: C: Extract only sequences that have N nucleotides
9.9 years ago by Devon Ryan 105k
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1.3k
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Comment: C: error sequence arrived
9.9 years ago by Devon Ryan 105k
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Answer: A: Is there a way to add xs tag to a sam file?
9.9 years ago by Devon Ryan 105k
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4.5k
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Comment: C: KeyError in MACS2
9.9 years ago by Devon Ryan 105k
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4.5k
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Answer: A: KeyError in MACS2
9.9 years ago by Devon Ryan 105k
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1.8k
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Comment: A: RNA-seq meta analysis
9.9 years ago by Devon Ryan 105k
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2.2k
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Answer: A: SAM file and RNA-seq stranded/unstranded paired/unpaired
9.9 years ago by Devon Ryan 105k
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2.8k
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Answer: A: Filtering samples or not before normalisation for samples from several groups
9.9 years ago by Devon Ryan 105k
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2.9k
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Answer: A: CuffDiff Fatal Error: Exit code 139
9.9 years ago by Devon Ryan 105k
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2.6k
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Comment: C: SNP: direction of effects
9.9 years ago by Devon Ryan 105k
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3.1k
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Comment: C: Identifying full length transcripts in a transcriptome
9.9 years ago by Devon Ryan 105k
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4.1k
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Answer: A: get dna sequence from chromosome, start, and end
9.9 years ago by Devon Ryan 105k
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15k
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Comment: C: MarkDuplicates memory issue
9.9 years ago by Devon Ryan 105k
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7.0k
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Comment: C: Make bam index human readable
9.9 years ago by Devon Ryan 105k
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2.3k
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Comment: C: HM450k probes portrayed on chromosomes
9.9 years ago by Devon Ryan 105k
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15k
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Comment: C: MarkDuplicates memory issue
9.9 years ago by Devon Ryan 105k
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2.5k
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Answer: A: chromosome name in summarizeOverlaps for RNASeq data
9.9 years ago by Devon Ryan 105k
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4.0k
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Answer: A: shall i select genes based on p-value alone if FDR is not significant?
9.9 years ago by Devon Ryan 105k
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1.6k
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Answer: A: NGS result with alteration: how to find whether the alteration will bring amino
9.9 years ago by Devon Ryan 105k
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5.8k
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Comment: Comment: Heatmap to identify differential regions between 2 groups
updated 3.8 years ago by 45k • written 9.9 years ago by 105k
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3.2k
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Answer: A: How to compare the alignment quality of two or more mapping software
9.9 years ago by Devon Ryan 105k
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12k
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Comment: C: BEDtools coverage output
9.9 years ago by Devon Ryan 105k
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2.7k
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Comment: C: removing gene-gene interaction from a correlation matrix
9.9 years ago by Devon Ryan 105k
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12k
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Comment: C: BEDtools coverage output
9.9 years ago by Devon Ryan 105k
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2.7k
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Comment: C: removing gene-gene interaction from a correlation matrix
9.9 years ago by Devon Ryan 105k
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12k
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Comment: C: BEDtools coverage output
9.9 years ago by Devon Ryan 105k
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2.7k
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Answer: A: removing gene-gene interaction from a correlation matrix
9.9 years ago by Devon Ryan 105k
2
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1
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12k
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Answer: A: BEDtools coverage output
9.9 years ago by Devon Ryan 105k
2
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2.9k
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Answer: A: Determining sample size in a miRNA experiment
9.9 years ago by Devon Ryan 105k
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45k
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Comment: C: How to extract unique mapped results from Bowtie2 bam results?
9.9 years ago by Devon Ryan 105k
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45k
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Comment: C: How to extract unique mapped results from Bowtie2 bam results?
9.9 years ago by Devon Ryan 105k
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3.7k
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Answer: A: Studying at two undergrads worth it for my future in bioinformatics or follow th
9.9 years ago by Devon Ryan 105k
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3.6k
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Comment: C: Do wiggle files have to be sorted?
9.9 years ago by Devon Ryan 105k
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0
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3.6k
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Answer: A: Do wiggle files have to be sorted?
9.9 years ago by Devon Ryan 105k
1
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1
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2.8k
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Answer: A: Help with Bowtie2
9.9 years ago by Devon Ryan 105k
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1
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4.9k
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Comment: C: Many 0 length reads after trimming
9.9 years ago by Devon Ryan 105k
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2
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1.5k
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Comment: C: Is it advisable to include or use Fragment DNA/Protein sequences in alignment an
9.9 years ago by Devon Ryan 105k
1
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0
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2.1k
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Answer: A: Why are my bed graphs and HTseq-count files not agreeing?
9.9 years ago by Devon Ryan 105k
1
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1
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5.8k
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Comment: Comment: Heatmap to identify differential regions between 2 groups
updated 3.8 years ago by 45k • written 9.9 years ago by 105k
1
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1
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6.3k
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Comment: C: DESeq2: Is dispersion estimation gene-wise or gene- and condition-wise?
9.9 years ago by Devon Ryan 105k
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3.8k
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Comment: C: Aligning miRNA sequences
9.9 years ago by Devon Ryan 105k
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4.9k
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Comment: C: meta analysis of p values from deseq2 output
9.9 years ago by Devon Ryan 105k
10,053 results • Page 104 of 202
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