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4
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1
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6.5k
views
Answer: A: problems installing HTSeq
8.6 years ago by Devon Ryan 105k
0
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1
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2.6k
views
Comment: C: Which Conversion tool is more good?
8.6 years ago by Devon Ryan 105k
1
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0
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5.9k
views
Comment: C: ERROR: while running fastqc on a fastq file
8.6 years ago by Devon Ryan 105k
5
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1
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9.4k
views
Answer: A: TopHat installation error
8.6 years ago by Devon Ryan 105k
1
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1
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3.4k
views
Comment: C: Differential expression analysis 5 conditions 3 replicates each matrix counts
8.6 years ago by Devon Ryan 105k
0
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0
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6.8k
views
Comment: C: Combining the RNAseq datasets
8.6 years ago by Devon Ryan 105k
2
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1
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5.9k
views
Answer: A: ERROR: while running fastqc on a fastq file
8.6 years ago by Devon Ryan 105k
0
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0
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5.0k
views
Comment: C: Bowtie2 alignment error
8.6 years ago by Devon Ryan 105k
0
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1
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2.6k
views
Answer: A: Which Conversion tool is more good?
8.6 years ago by Devon Ryan 105k
1
vote
1
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4.9k
views
Comment: C: No output from samtools index?
8.6 years ago by Devon Ryan 105k
0
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0
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1.8k
views
Comment: C: Split BAM file into parts with headers rebuilt
8.6 years ago by Devon Ryan 105k
3
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1
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3.4k
views
Answer: A: Differential expression analysis 5 conditions 3 replicates each matrix counts
8.6 years ago by Devon Ryan 105k
0
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1
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3.5k
views
Comment: C: IP efficiency in Chip-Seq data
8.6 years ago by Devon Ryan 105k
3
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0
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5.0k
views
Answer: A: Using LRT and Wald test to filter differentially expressed loci in RNA-seq datas
8.6 years ago by Devon Ryan 105k
0
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1
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3.5k
views
Comment: C: IP efficiency in Chip-Seq data
8.6 years ago by Devon Ryan 105k
0
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0
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3.1k
views
Answer: A: Poisson distribution of ChIP-seq
8.6 years ago by Devon Ryan 105k
2
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0
replies
3.5k
views
Answer: A: IP efficiency in Chip-Seq data
8.6 years ago by Devon Ryan 105k
0
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0
replies
9.2k
views
Comment: C: Blacklisted regions for mm10
8.6 years ago by Devon Ryan 105k
0
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1
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9.2k
views
Comment: C: Blacklisted regions for mm10
8.6 years ago by Devon Ryan 105k
0
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0
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1.7k
views
Comment: C: Tophat and HISAT
8.6 years ago by Devon Ryan 105k
1
vote
1
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2.2k
views
Comment: C: Site Frequencey Spectrum of Mutations from BAM File
8.6 years ago by Devon Ryan 105k
1
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0
replies
3.0k
views
Comment: C: Deseq2 multiple comarison
8.6 years ago by Devon Ryan 105k
0
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1
reply
9.2k
views
Comment: C: Blacklisted regions for mm10
8.6 years ago by Devon Ryan 105k
5
votes
2
replies
3.0k
views
Answer: A: Deseq2 multiple comarison
8.6 years ago by Devon Ryan 105k
1
vote
1
reply
4.4k
views
Comment: C: Reads not assigned to features in featureCounts software
8.6 years ago by Devon Ryan 105k
0
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0
replies
3.3k
views
Comment: C: Alignment records alter after bam -> cram -> bam conversion using samtools
8.6 years ago by Devon Ryan 105k
1
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1
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2.5k
views
Answer: C: running MISO with ENSEMBL GTF if reads were aligned against UCSC genome
8.6 years ago by Devon Ryan 105k
0
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0
replies
13k
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Comment: C: Picard vs samtools rmdup
8.6 years ago by Devon Ryan 105k
0
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2
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3.3k
views
Comment: C: Reason for multiple mapping of reads ?
8.6 years ago by Devon Ryan 105k
1
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0
replies
6.1k
views
Comment: C: ensembl id to gene symbol
8.6 years ago by Devon Ryan 105k
0
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0
replies
7.9k
views
Comment: C: STAR alignment, RNA-seq
8.6 years ago by Devon Ryan 105k
0
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0
replies
7.5k
views
Comment: C: how to get gene names and gene id given co ordinates from ensemble
8.6 years ago by Devon Ryan 105k
3
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1
reply
7.5k
views
Answer: A: how to get gene names and gene id given co ordinates from ensemble
8.6 years ago by Devon Ryan 105k
0
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1
reply
3.3k
views
Comment: C: Alignment records alter after bam -> cram -> bam conversion using samtools
8.6 years ago by Devon Ryan 105k
0
votes
0
replies
2.5k
views
Answer: A: RNA seq data with missing values
8.6 years ago by Devon Ryan 105k
0
votes
1
reply
3.5k
views
Comment: C: Does BBMap not include headers in BAM files?
8.6 years ago by Devon Ryan 105k
1
vote
1
reply
3.5k
views
Answer: A: Does BBMap not include headers in BAM files?
8.6 years ago by Devon Ryan 105k
2
votes
1
reply
6.1k
views
Answer: A: ensembl id to gene symbol
8.6 years ago by Devon Ryan 105k
4
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0
replies
2.5k
views
Answer: A: Interpreting Chip Seq Results
8.6 years ago by Devon Ryan 105k
0
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1
reply
2.9k
views
Comment: C: pythonic way creating a matrix from multiple csv files.
8.6 years ago by Devon Ryan 105k
1
vote
0
replies
3.7k
views
Comment: C: HISAT2 output statistics does not match the actual output
updated 8.6 years ago by 35k • written 8.6 years ago by 105k
1
vote
1
reply
3.1k
views
Comment: C: bamCompare log2 ratio p-value
8.6 years ago by Devon Ryan 105k
1
vote
1
reply
2.9k
views
Answer: A: Comparison of ChIPseq enrichment in specific regions
8.6 years ago by Devon Ryan 105k
2
votes
1
reply
2.0k
views
Answer: A: Relationship between histone marks and expression level inferred by ChIP-seq and
8.6 years ago by Devon Ryan 105k
1
vote
1
reply
1.5k
views
Comment: C: Using the repair utility in FeatureCounts
8.6 years ago by Devon Ryan 105k
0
votes
1
reply
1.5k
views
Answer: A: Problems with Paired-End Data when performing counts
8.6 years ago by Devon Ryan 105k
2
votes
0
replies
1.1k
views
Answer: A: Tophat2 for size filter
8.6 years ago by Devon Ryan 105k
2
votes
1
reply
4.2k
views
Comment: C: DNA fragmentation is biased
8.6 years ago by Devon Ryan 105k
2
votes
0
replies
3.1k
views
Answer: A: bam file calculate sliding window insert sizes
8.6 years ago by Devon Ryan 105k
0
votes
1
reply
3.1k
views
Comment: C: bam file calculate sliding window insert sizes
8.6 years ago by Devon Ryan 105k
10,053 results • Page 61 of 202
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