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4.0k
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Answer: A: Set control vs experiment for gage/pathview!
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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5.4k
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Comment: C: Dataset's name in BioMart for S. pombe
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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2
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Answer: A: About Mapping Efficiency of Bisulfite aligners
5.9 years ago by Devon Ryan 105k
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8.5k
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Comment: C: Linux command line use to rename a gff annotation file "Name" attribute
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
3
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1
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7.8k
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Answer: A: BWA: improper orientation but listed as properly paired
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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2.7k
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Comment: C: How to average different rows of different groups?
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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1
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5.4k
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Comment: C: tophat2 stopped at bowtie step
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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14k
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Comment: C: [samtools depth] Calculate percent of the genome covered
updated 5.9 years ago by 45k • written 9.8 years ago by 105k
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7.6k
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Comment: C: EdgeR toptags question
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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1
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3.4k
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Comment: C: chain files for mouse mm9 to ensembl version 75
updated 5.9 years ago by 45k • written 9.8 years ago by 105k
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1
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2.7k
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Comment: C: Error running ExomeDepth
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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1
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34k
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Comment: C: RNAseq expression data log2 transformed has negative values.
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
3
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1
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9.6k
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Answer: A: Difference between unique reads and read count
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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1
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1.4k
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Comment: C: Setting up local blast in webserver
5.9 years ago by Devon Ryan 105k
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1
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1.4k
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Comment: C: Setting up local blast in webserver
5.9 years ago by Devon Ryan 105k
1
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1
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2.7k
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Comment: C: Is there a way to output the single counts for every region with samtools?
updated 5.9 years ago by 45k • written 9.8 years ago by 105k
1
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1
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3.2k
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Comment: C: Adding a custom track to a current session UCSC genome browser
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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1
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7.7k
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Comment: Comment: TMM normalization for RNA seq data with three replicates (2 samples)
updated 5.9 years ago by 45k • written 9.8 years ago by 105k
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1
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7.7k
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Comment: Comment: TMM normalization for RNA seq data with three replicates (2 samples)
updated 5.9 years ago by 45k • written 9.9 years ago by 105k
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0
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3.1k
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Comment: C: BLAST: Querying a single sequence without input file in C
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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1
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3.1k
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Comment: C: BLAST: Querying a single sequence without input file in C
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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7.6k
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Comment: C: finding differentially expressed genes in three arm treatment RNA seq data
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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1
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7.6k
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Comment: C: finding differentially expressed genes in three arm treatment RNA seq data
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
1
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0
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3.6k
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Comment: C: How to compare two sets of results from Limma?
5.9 years ago by Devon Ryan 105k
2
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2
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3.0k
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Answer: A: Statistical tests for NGS profile/enrichment plots
5.9 years ago by Devon Ryan 105k
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0
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2.6k
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Answer: A: For a given set of coordinates is there a simple fast way of determining the 'su
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
3
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0
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14k
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Answer: A: ViennaRNA and Python
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
1
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0
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6.8k
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Comment: C: Filter overlapping reads in pysam
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
3
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2
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6.8k
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Answer: A: Filter overlapping reads in pysam
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
3
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1
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8.0k
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Answer: A: EdgeR-GLMs correcting for batch effects
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
1
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0
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2.9k
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Comment: C: appropriate statistics to test for differences in heterogeneous features betwee
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
3
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1
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6.5k
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Answer: A: Accessing data in within a DESeqDataSet class from DESeq2 library
updated 5.9 years ago by 45k • written 9.8 years ago by 105k
1
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0
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6.5k
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Comment: C: Accessing data in within a DESeqDataSet class from DESeq2 library
updated 5.9 years ago by 45k • written 9.8 years ago by 105k
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1
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3.5k
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Comment: C: Deduplication using UMItools
5.9 years ago by Devon Ryan 105k
8
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48k
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Answer: A: What is P value and Padj value in DEGs ?
5.9 years ago by Devon Ryan 105k
2
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1
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3.5k
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Answer: A: Deduplication using UMItools
5.9 years ago by Devon Ryan 105k
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0
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1.9k
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Answer: A: separate 2 delimiter
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
5
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2
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45k
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Comment: C: How to extract unique mapped results from Bowtie2 bam results?
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
2
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1
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11k
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Answer: C: Setting elementMetadata in genomicranges list objects
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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0
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4.2k
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Comment: C: match three columns in three files and print to one
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
4
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1
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4.2k
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Answer: A: match three columns in three files and print to one
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
2
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0
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7.5k
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Comment: C: GOSeq (very few enriched genes with p-value less than 0.05)
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
3
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0
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16k
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Answer: A: What is the best programming language for NGS data analysis pipeline development
updated 5.9 years ago by 45k • written 11.6 years ago by 105k
1
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1
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7.6k
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Answer: A: Hypergeometric test for overlapped genes
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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0
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9.6k
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Comment: C: Phred quality Score
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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0
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9.6k
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Comment: C: Phred quality Score
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
0
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1
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9.6k
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Answer: A: Phred quality Score
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
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0
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4.2k
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Answer: A: DEXSeq error while creating ExonCountSet object
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
18
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4
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23k
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Answer: Answer: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
updated 3.2 years ago by 45k • written 10.2 years ago by 105k
1
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0
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22k
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Comment: C: Scatter Plot For Correlations With Heatdensity
updated 5.9 years ago by 45k • written 11.5 years ago by 105k
10,053 results • Page 8 of 202
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