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2
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1
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3.3k
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Answer: A: Weird Error: dim(X) must have positive value While is.data.frame(x) is TRUE
5.7 years ago by Devon Ryan 105k
2
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1
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2.2k
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Answer: C: deepTools/Galaxy Optimize K-Means Clusters - Elbow Plot
5.7 years ago by Devon Ryan 105k
0
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0
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5.7k
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Comment: C: How to create color range for RPKM/FPKM using R?
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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0
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2.5k
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Answer: A: How does homozygous allele sequences appear in Sequencing data?
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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0
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2.6k
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Comment: C: RaceID3 using 10x datasets
5.7 years ago by Devon Ryan 105k
4
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0
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2.0k
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Answer: A: What do you think of sci-hub?
5.7 years ago by Devon Ryan 105k
1
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1
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2.6k
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Answer: C: RaceID3 using 10x datasets
5.7 years ago by Devon Ryan 105k
2
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1
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5.1k
views
Answer: A: Samtools Help needed: index seg fault after reheader
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
2
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1
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2.7k
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Answer: A: How to get reads, which I filtrate
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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2.6k
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Comment: C: Plotting Fold change (FC) inside genomic interval
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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1.7k
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Comment: C: single end miRNA analysis
updated 5.7 years ago by 45k • written 9.7 years ago by 105k
4
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2
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4.7k
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Answer: A: Differential expression with CQN normalized RNA-seq data
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
2
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0
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3.4k
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Answer: A: Overlaid XY plot with two different colors for control and target genes
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
4
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0
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5.7k
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Answer: A: Making a Model Matrix for Anova-like analysis
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
4
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1
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3.6k
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Answer: A: manipulating text in linux enviroment
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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5.7k
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Comment: C: Making a Model Matrix for Anova-like analysis
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
2
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1
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3.8k
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Answer: A: edgeR error while trying to read the data
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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2.6k
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Comment: C: TP, FP, TN and FN in error correction reads
updated 5.7 years ago by 45k • written 9.7 years ago by 105k
0
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0
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2.6k
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Comment: C: Difference between replicates and conditions in RNA-seq
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
2
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0
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1.2k
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Answer: A: How to calculate methylation FC for genes based on CpG FC data?
5.7 years ago by Devon Ryan 105k
1
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1
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6.4k
views
Answer: A: More than one transcript per protein in Uniprot
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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1
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3.7k
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Answer: A: binding close to gene
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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3.0k
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Comment: C: What is the right statistical test that would distinguish between two treatments
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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0
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8.3k
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Answer: A: EdgeR TMM normalisation
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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29k
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Comment: C: RNA-seq normalization: How to use TMM and rpkm() in EdgeR
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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0
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6.1k
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Comment: C: HiSeq2000 RNA-seq QC
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
4
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1
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29k
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Answer: A: RNA-seq normalization: How to use TMM and rpkm() in EdgeR
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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0
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2.9k
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Answer: A: What preliminary steps should I do before checking the quality of sequence for R
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
3
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0
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2.1k
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Answer: A: Sequence mapping region around SNP with allele specificity
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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0
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3.5k
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Comment: C: Are Gene Symbols case sensitive or insensitive?
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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2
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4.6k
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Comment: C: Blacklist for questionable genbank entries
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
4
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1
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4.2k
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Answer: A: gene identification by exome seq of case control
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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0
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2.0k
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Answer: A: STAR genome indexing with multiple gff3 files
5.7 years ago by Devon Ryan 105k
0
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1
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3.0k
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Comment: C: Resort bam from another bam header
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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5.1k
views
Comment: C: How to compute MAPQ distribution with Rsamtools
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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0
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4.2k
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Comment: C: error ,,, file.vcf --> file snpEff.vcf
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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0
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2.9k
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Comment: C: DEXSeq for exon counting & package name for human?
updated 5.7 years ago by 45k • written 9.7 years ago by 105k
1
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0
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29k
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Answer: A: Getting list of chromosome names from indexed BAM file
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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2
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1.1k
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Comment: C: Merging BS-Seq data from replicates
5.7 years ago by Devon Ryan 105k
0
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1
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1.5k
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Comment: C: NMF for Mutation Signatures
5.7 years ago by Devon Ryan 105k
0
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1
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2.1k
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Comment: C: Codon counts from a bam file
updated 5.7 years ago by 45k • written 9.7 years ago by 105k
0
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1
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7.4k
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Answer: A: TMM normalization for RNA seq data with three replicates (2 samples)
updated 5.7 years ago by 45k • written 9.7 years ago by 105k
0
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0
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5.2k
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Comment: C: best workflow for RNA data analysis without replications
updated 5.7 years ago by 45k • written 9.7 years ago by 105k
0
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0
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2.2k
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Comment: C: Gene G6PD of Rattus norvegicus
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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0
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3.3k
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Answer: A: Retrieve all the differentially methylated cpg's in a region
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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0
replies
5.4k
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Answer: A: Select a set of reads from BAM file
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
reply
17k
views
Comment: C: Extracting regions from .bam file using a .gff or .gtf file
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
5
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1
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8.6k
views
Answer: A: Pick random position from specific genomic regions
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
1
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0
replies
5.4k
views
Comment: C: GTF2/GFF3 "feature" types and expression analysis
updated 5.7 years ago by 45k • written 11.4 years ago by 105k
0
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1
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4.8k
views
Comment: C: RNA-Seq sequencing depth information from NCBI
updated 5.8 years ago by 45k • written 11.4 years ago by 105k
10,053 results • Page 9 of 202
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