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0
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561
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Comment:
Comment: Deeptools scale issue for plotHeatmap
9 weeks ago by
Devon Ryan
104k
0
votes
1
reply
561
views
Comment:
Comment: Deeptools scale issue for plotHeatmap
9 weeks ago by
Devon Ryan
104k
0
votes
1
reply
561
views
Comment:
Comment: Deeptools scale issue for plotHeatmap
9 weeks ago by
Devon Ryan
104k
2
votes
0
replies
819
views
Answer:
Answer: --normalizeUsing RPGC
4 months ago by
Devon Ryan
104k
1
vote
1
reply
555
views
Comment:
Comment: Wrong in Deeptools : the enrichment of TSS and TES region are similar when using
6 months ago by
Devon Ryan
104k
1
vote
0
replies
634
views
Comment:
Comment: How to get ncol = nrow?
7 months ago by
Devon Ryan
104k
2
votes
1
reply
1.4k
views
Comment:
Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
8 months ago by
Devon Ryan
104k
0
votes
0
replies
550
views
Comment:
Comment: DESeq2 : parameter of Negative Binomial model in a context of gene expression
12 months ago by
Devon Ryan
104k
3
votes
1
reply
1.0k
views
Answer:
Answer: No differentially expressed genes after multiple testing correction in mice
12 months ago by
Devon Ryan
104k
5
votes
0
replies
2.1k
views
Answer:
Answer: Bioinformatics opportunities in Europe?
13 months ago by
Devon Ryan
104k
0
votes
0
replies
893
views
Comment:
Comment: How Wald test calculates p-values in DESeq2?
19 months ago by
Devon Ryan
104k
1
vote
1
reply
13k
views
Comment:
Comment: Convert fastq.gz to fastq.bgz
19 months ago by
Devon Ryan
104k
1
vote
0
replies
618
views
Comment:
Comment: Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
20 months ago by
Devon Ryan
104k
0
votes
0
replies
2.0k
views
Comment:
Comment: Come work with me! Bioinformatician - Boston MA
20 months ago by
Devon Ryan
104k
1
vote
1
reply
2.0k
views
Comment:
Comment: Come work with me! Bioinformatician - Boston MA
20 months ago by
Devon Ryan
104k
7
votes
6
replies
2.0k
views
Job:
Come work with me! Bioinformatician - Boston MA
bioinformatician
updated 11 months ago by
Ram
43k • written 20 months ago by
Devon Ryan
104k
2
votes
1
reply
667
views
Answer:
Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
24 months ago by
Devon Ryan
104k
1
vote
1
reply
698
views
Comment:
Comment: Calculate the ratio of H3K4me3 to H3K4me1 using output of deeptools computeMatri
2.1 years ago by
Devon Ryan
104k
1
vote
0
replies
866
views
Answer:
Answer: Interpreting output produced by computeMatrix reference-point
2.1 years ago by
Devon Ryan
104k
1
vote
1
reply
1.9k
views
Comment:
Comment: Pool or not to pool
2.1 years ago by
Devon Ryan
104k
2
votes
1
reply
1.9k
views
Comment:
Comment: Pool or not to pool
2.1 years ago by
Devon Ryan
104k
1
vote
1
reply
1.9k
views
Comment:
Comment: Pool or not to pool
2.2 years ago by
Devon Ryan
104k
1
vote
1
reply
1.5k
views
Comment:
Comment: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
2.2 years ago by
Devon Ryan
104k
0
votes
0
replies
3.5k
views
Comment:
Comment: Why piping a conda command into bash doesn't work ?
2.2 years ago by
Devon Ryan
104k
1
vote
2
replies
3.5k
views
Comment:
Comment: Why piping a conda command into bash doesn't work ?
2.2 years ago by
Devon Ryan
104k
1
vote
0
replies
2.4k
views
Comment:
Comment: Extracting Methylation Data
2.3 years ago by
Devon Ryan
104k
1
vote
0
replies
2.5k
views
Comment:
Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.3 years ago by
Devon Ryan
104k
1
vote
0
replies
974
views
Comment:
Comment: bisulfite methylation alignment rate
2.3 years ago by
Devon Ryan
104k
0
votes
0
replies
10k
views
Comment:
Comment: DESeq2 modelling and Wald's test
2.3 years ago by
Devon Ryan
104k
1
vote
1
reply
2.5k
views
Comment:
Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.3 years ago by
Devon Ryan
104k
2
votes
1
reply
2.8k
views
Comment:
Comment: normalization for unsupervised analysis by DESeq2
2.3 years ago by
Devon Ryan
104k
0
votes
1
reply
974
views
Comment:
Comment: bisulfite methylation alignment rate
2.3 years ago by
Devon Ryan
104k
0
votes
0
replies
4.2k
views
Comment:
Comment: HIsat2 bam and summary output - multiple output file type
2.3 years ago by
Devon Ryan
104k
2
votes
0
replies
2.8k
views
Comment:
Comment: normalization for unsupervised analysis by DESeq2
2.3 years ago by
Devon Ryan
104k
0
votes
0
replies
9.0k
views
Comment:
Comment: featureCounts isoform vs gene summarization
2.3 years ago by
Devon Ryan
104k
2
votes
0
replies
849
views
Answer:
Answer: deeptools plotprofile TSS and TES are very close
2.4 years ago by
Devon Ryan
104k
1
vote
0
replies
1.9k
views
Comment:
Comment: delete a file
2.4 years ago by
Devon Ryan
104k
2
votes
0
replies
857
views
Answer:
Answer: multiBamSummary for unpaired end read?
2.4 years ago by
Devon Ryan
104k
0
votes
1
reply
1.4k
views
Answer:
Answer: Log2 Scale Deeptools
2.5 years ago by
Devon Ryan
104k
0
votes
0
replies
1.4k
views
Comment:
Comment: Log2 Scale Deeptools
2.5 years ago by
Devon Ryan
104k
3
votes
1
reply
1.6k
views
Answer:
Answer: Errors when ajusting pvalue on R
2.5 years ago by
Devon Ryan
104k
2
votes
0
replies
1.6k
views
Answer:
Answer: Normalizing BAM Files
2.5 years ago by
Devon Ryan
104k
1
vote
0
replies
1.9k
views
Answer:
Answer: deeptools reference-point center
2.5 years ago by
Devon Ryan
104k
1
vote
1
reply
1.8k
views
Comment:
Comment: ? in cram files
2.6 years ago by
Devon Ryan
104k
2
votes
1
reply
1.8k
views
Answer:
Answer: ? in cram files
2.6 years ago by
Devon Ryan
104k
1
vote
0
replies
1.9k
views
Comment:
Comment: Singularity container for deepTools?
2.6 years ago by
Devon Ryan
104k
0
votes
0
replies
1.9k
views
Comment:
Comment: Kmergenie module readfq not found
2.7 years ago by
Devon Ryan
104k
0
votes
0
replies
1.6k
views
Comment:
Comment: DESeq2 Not full Rank - Age & Medication
2.7 years ago by
Devon Ryan
104k
2
votes
1
reply
1.6k
views
Comment:
Comment: DESeq2 Not full Rank - Age & Medication
2.7 years ago by
Devon Ryan
104k
1
vote
0
replies
1.3k
views
Comment:
Comment: Bedfile format deeptools
2.7 years ago by
Devon Ryan
104k
10,041 results • Page
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