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2
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3.5k
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Answer: A: R package for clonal expansion
8.9 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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3.8k
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Comment: C: Only one cluster in multiple tumor phylogeny samples
8.9 years ago by Ming Tommy Tang ★ 4.7k
0
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2
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3.8k
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Comment: C: Only one cluster in multiple tumor phylogeny samples
8.9 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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7.0k
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Comment: C: Identifying the tumor clones and subclones with VAF from VarScan2
8.9 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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5.8k
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Comment: C: Sciclone on exome sequencing data
8.9 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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7.0k
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Comment: Comment: Identifying the tumor clones and subclones with VAF from VarScan2
updated 3.9 years ago by 45k • written 8.9 years ago by ★ 4.7k
0
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1
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7.0k
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Comment: Comment: Identifying the tumor clones and subclones with VAF from VarScan2
updated 3.9 years ago by 45k • written 8.9 years ago by ★ 4.7k
2
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0
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6.9k
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Answer: A: Precomputed TCGA tumor purity data
9.0 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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5.6k
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Answer: A: (Modern, mid-2016) RNA-seq software pipeline
9.0 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.1k
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Comment: C: A tale of two heatmap function
9.0 years ago by Ming Tommy Tang ★ 4.7k
7
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2
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2.1k
views
Tutorial: A tale of two heatmap function
clustering heatmap
updated 2.5 years ago by 45k • written 9.0 years ago by ★ 4.7k
0
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0
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38k
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Comment: A: Heatmaps in R
9.0 years ago by Ming Tommy Tang ★ 4.7k
14
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0
replies
10k
views
Tutorial: How to generate PCA plot and heatmaps in R
heatmap PCA RNA-Seq R
updated 2.5 years ago by 45k • written 9.0 years ago by ★ 4.7k
0
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0
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1.9k
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How to get Satellite DNA expression level from TCGA RNAseq data
RNA-Seq
9.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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4.7k
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Comment: C: Random Genomic Regions Of A Given Length Distribution
9.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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59k
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Comment: C: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Ge
9.1 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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2.2k
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Comment: C: Confusion about the term genome coverage
9.2 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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4.5k
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Comment: C: Trimmomatic: Does it matter to trim the fastq before or after merging multiple r
9.2 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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2.2k
views
Comment: C: Confusion about the term genome coverage
9.2 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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4.8k
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Answer: A: Visualization of ChIP-seq data (mapped reads)
9.2 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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4.8k
views
Comment: A: Visualization of ChIP-seq data (mapped reads)
9.2 years ago by Ming Tommy Tang ★ 4.7k
3
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2
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2.3k
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Comment: C: ChIP data analysis high binding sites
9.2 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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2.0k
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Comment: C: any papers/methods on inferring whole genome doubling/non-reciprocal translocati
9.2 years ago by Ming Tommy Tang ★ 4.7k
1
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1
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6.2k
views
Answer: A: criteria for choosing proper parameters for MASC2 -- chip-seq ?
9.2 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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7.3k
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Answer: A: Combining RNA seq and H3K27ac ChIP seq data
9.2 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.3k
views
Answer: A: Correlate binding sites of two transcription factor from chip-seq data
9.2 years ago by Ming Tommy Tang ★ 4.7k
2
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0
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2.7k
views
Answer: A: Retrieve gene names from gene symbols using Entrez?
9.2 years ago by Ming Tommy Tang ★ 4.7k
2
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3
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2.0k
views
any papers/methods on inferring whole genome doubling/non-reciprocal translocations from WGS data
sequencing
updated 9.2 years ago by ★ 3.2k • written 9.2 years ago by ★ 4.7k
0
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1
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9.7k
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Comment: C: EaSeq - Interactive ChIP-seq analysis and visualization (for Windows)
9.3 years ago by Ming Tommy Tang ★ 4.7k
2
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0
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5.1k
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Answer: A: How to get nucleotide sequences for a given list of genomic positions.
9.3 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
6.6k
views
Comment: C: [UPDATE] Thrown into a Bioinformatics Position
9.3 years ago by Ming Tommy Tang ★ 4.7k
3
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0
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6.6k
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Answer: A: [UPDATE] Thrown into a Bioinformatics Position
9.3 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
7.2k
views
Answer: A: Multisample vcf to table
9.3 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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17k
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Answer: A: Which Chip Seq Peak Callers Do You Use?
9.3 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.2k
views
Is there any tool for assessing the significance of co-deletion or co-amplification of genes or genomic regions?
DNA-seq
9.3 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.3k
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Answer: A: Do I need to remove unmapped reads before running MACS2?
9.3 years ago by Ming Tommy Tang ★ 4.7k
3
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0
replies
11k
views
Answer: A: Chip-Seq - Peak caller for broad enrichment of histone modifications?
9.3 years ago by Ming Tommy Tang ★ 4.7k
4
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0
replies
2.2k
views
Comment: C: Depth of coverage
9.3 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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1.5k
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analyze Digital restriction enzyme analysis of methylation (DREAM) data
methylation
9.3 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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8.4k
views
Comment: C: How can I calculate bisulfite conversion rate from RRBS data?
9.3 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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4.4k
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Comment: C: How Much Is Too Much For 5 Prime End Methylation Rate In Rrbs Data ?
9.3 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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8.4k
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Comment: C: How can I calculate bisulfite conversion rate from RRBS data?
9.3 years ago by Ming Tommy Tang ★ 4.7k
1
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1
reply
3.2k
views
Comment: C: Help simulating RRBS reads
9.3 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
8.6k
views
Comment: C: Peak callers for ChIP seq comparison
9.4 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
8.6k
views
Comment: C: Peak callers for ChIP seq comparison
9.4 years ago by Ming Tommy Tang ★ 4.7k
8
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1
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8.6k
views
Answer: A: Peak callers for ChIP seq comparison
9.4 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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58k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
9.4 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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48k
views
Answer: A: FPKM vs raw counts vs RPKM
9.4 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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2.9k
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Comment: C: Chip-Seq (Transcription Factor) data resources
9.4 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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8.8k
views
Comment: C: Visualising the number of overlapping peaks in ChIP-seq studies
9.4 years ago by Ming Tommy Tang ★ 4.7k
477 results • Page 6 of 10
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