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2
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0
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42k
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Answer: Answer: generating genome indexes with STAR
2.3 years ago by DareDevil ★ 4.4k
2
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0
replies
4.6k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
2.3 years ago by DareDevil ★ 4.4k
1
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0
replies
2.6k
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Comment: Comment: Does anyone know what cmpress is?
2.3 years ago by DareDevil ★ 4.4k
1
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0
replies
34k
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Comment: Comment: Where To Download Pam50 Gene Set?
2.3 years ago by DareDevil ★ 4.4k
1
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0
replies
2.0k
views
Comment: Comment: PAM50 analysis from RNAseq data
2.3 years ago by DareDevil ★ 4.4k
3
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0
replies
1.6k
views
Answer: Answer: Is reciprocal best hit method applicable for non-coding RNA to find orthologs?
2.3 years ago by DareDevil ★ 4.4k
5
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1
reply
1.7k
views
Answer: Answer: Counting distance between kmer instances in a sequence
2.3 years ago by DareDevil ★ 4.4k
2
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0
replies
3.4k
views
Answer: Answer: Single end RNAseq data strandedness infer-experiment-py
2.3 years ago by DareDevil ★ 4.4k
2
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0
replies
3.7k
views
Comment: Comment: Question about featureCounts strand options
2.3 years ago by DareDevil ★ 4.4k
2
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0
replies
7.1k
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Comment: Comment: mistakenly ran featureCounts in paired-end mode on single-read data
2.3 years ago by DareDevil ★ 4.4k
6
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1
reply
2.3k
views
Answer: Answer: drug sensitivity prediction
2.3 years ago by DareDevil ★ 4.4k
2
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1
reply
46k
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Answer: Answer: Generating consensus sequence from bam file
2.4 years ago by DareDevil ★ 4.4k
2
votes
1
reply
960
views
What is the possibility of Depth (DP) being higher than the coverage
GATK DP Coverage Depth HaplotypeCaller
updated 2.4 years ago by 11k • written 2.4 years ago by ★ 4.4k
3
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0
replies
19k
views
Comment: Comment: Building Dict File for GATK
2.4 years ago by DareDevil ★ 4.4k
2
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0
replies
7.7k
views
Comment: Comment: Human reference files in HG38 GATK resource bundle
2.4 years ago by DareDevil ★ 4.4k
2
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0
replies
6.3k
views
Comment: Comment: GATK4 VariantRecalibrator resource error
2.5 years ago by DareDevil ★ 4.4k
1
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0
replies
2.3k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
2.5 years ago by DareDevil ★ 4.4k
2
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1
reply
2.3k
views
Answer: Answer: DESeq2 multiple conditions, time points and sample types
2.6 years ago by DareDevil ★ 4.4k
1
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0
replies
2.3k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
2.6 years ago by DareDevil ★ 4.4k
1
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0
replies
2.3k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
2.6 years ago by DareDevil ★ 4.4k
6
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1
reply
5.8k
views
Comment: Comment: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
updated 2.6 years ago by 45k • written 2.6 years ago by ★ 4.4k
4
votes
1
reply
5.8k
views
Comment: Comment: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
2.6 years ago by DareDevil ★ 4.4k
6
votes
1
reply
5.8k
views
Answer: Answer: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
updated 2.6 years ago by 45k • written 2.6 years ago by ★ 4.4k
4
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1
reply
4.1k
views
Comment: Comment: How to Remove Sample Names from Heatmap
2.6 years ago by DareDevil ★ 4.4k
5
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0
replies
4.1k
views
Answer: Answer: How to Remove Sample Names from Heatmap
2.6 years ago by DareDevil ★ 4.4k
5
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1
reply
4.1k
views
Comment: Comment: How to Remove Sample Names from Heatmap
2.6 years ago by DareDevil ★ 4.4k
4
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0
replies
1.7k
views
Comment: Comment: How to deal with the probe id mapping to multiple gene ids?
2.6 years ago by DareDevil ★ 4.4k
2
votes
0
replies
1.7k
views
Comment: Comment: How to deal with the probe id mapping to multiple gene ids?
2.6 years ago by DareDevil ★ 4.4k
11
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3
replies
1.7k
views
How to deal with the probe id mapping to multiple gene ids?
match microarray affymetrix probe gene
2.6 years ago by DareDevil ★ 4.4k
6
votes
3
replies
1.4k
views
Informations for gene summary are missing in eutils api of NCBI?
NCBI esummary eutils Gene
updated 2.6 years ago by ▴ 800 • written 2.6 years ago by ★ 4.4k
0
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0
replies
1.4k
views
Comment: Comment: Informations for gene summary are missing in eutils api of NCBI?
2.6 years ago by DareDevil ★ 4.4k
5
votes
1
reply
1.0k
views
How do I retrieve withdrawn or replaced gene id for homosapiens from ncbi gene ?
NCBI Eutils
updated 2.6 years ago by 45k • written 2.6 years ago by ★ 4.4k
2
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0
replies
4.2k
views
Comment: Comment: Detection P-value in illumina data
2.7 years ago by DareDevil ★ 4.4k
2
votes
0
replies
4.3k
views
Answer: Answer: Graph using corrplot for multiple sets of data
2.7 years ago by DareDevil ★ 4.4k
3
votes
3
replies
4.7k
views
Tutorial: Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
GDC TCGABiolinks STAR
updated 2.7 years ago by 45k • written 3.6 years ago by ★ 4.4k
4
votes
0
replies
787
views
How to identify the batch informations from the sample ID?
batch-correction TCGAbatch DESeq2 TCGA
updated 2.7 years ago by 45k • written 2.7 years ago by ★ 4.4k
1
vote
0
replies
1.3k
views
Comment: Comment: Gene ontology vs Gene set enrichment
2.9 years ago by DareDevil ★ 4.4k
1
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0
replies
3.9k
views
Comment: Comment: Can transcripts per million be fed into edgeR and voom?
2.9 years ago by DareDevil ★ 4.4k
2
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0
replies
12k
views
Comment: Comment: CPM or TPM in GSEA analysis
2.9 years ago by DareDevil ★ 4.4k
4
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1
reply
12k
views
Comment: Comment: CPM or TPM in GSEA analysis
2.9 years ago by DareDevil ★ 4.4k
9
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1
reply
12k
views
Answer: Answer: CPM or TPM in GSEA analysis
2.9 years ago by DareDevil ★ 4.4k
1
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0
replies
2.7k
views
Comment: Comment: Questions about supplementary file contents of a GEO dataset
2.9 years ago by DareDevil ★ 4.4k
3
votes
0
replies
3.7k
views
Answer: Answer: strandness of paired-end data
2.9 years ago by DareDevil ★ 4.4k
1
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0
replies
2.9k
views
Comment: Comment: RSeQC confusing output - Half fails to determine, half is reverse strand
2.9 years ago by DareDevil ★ 4.4k
1
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0
replies
4.8k
views
Comment: Comment: CIBERSORT input file for RNA-Seq data
3.0 years ago by DareDevil ★ 4.4k
0
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0
replies
1.4k
views
Comment: Comment: How to get per sample read depth from VCF with no DP field
3.0 years ago by DareDevil ★ 4.4k
7
votes
0
replies
15k
views
Answer: Answer: combining quantification (featureCounts) result files into a single dataset
3.0 years ago by DareDevil ★ 4.4k
3
votes
0
replies
9.3k
views
Answer: Answer: Featurecounts to DESEq2 - How to merge biological replicates?
3.0 years ago by DareDevil ★ 4.4k
2
votes
0
replies
4.1k
views
Answer: Answer: STAR alignment in a full directory
3.1 years ago by DareDevil ★ 4.4k
2
votes
0
replies
6.6k
views
Answer: Answer: How to run STAR with multiple files
3.1 years ago by DareDevil ★ 4.4k
248 results • Page 2 of 5
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