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2
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2
replies
3.6k
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How to decide what gene set libraries to use in your GSEA analysis
GSEA
updated 2.1 years ago by ▴ 260 • written 2.2 years ago by ▴ 100
0
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0
replies
2.4k
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Comment: Comment: Running Enrichr in python using a background gene list
2.2 years ago by Jen ▴ 100
0
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1
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2.4k
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Comment: Comment: Running Enrichr in python using a background gene list
2.2 years ago by Jen ▴ 100
0
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4
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2.4k
views
Running Enrichr in python using a background gene list
gp.enrichr python Enrichr
2.2 years ago by Jen ▴ 100
0
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1
reply
4.1k
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Comment: Comment: Selecting MOUSE gene set libraries in Enrichr
2.2 years ago by Jen ▴ 100
4
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5
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4.1k
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Selecting MOUSE gene set libraries in Enrichr
Enrichr
updated 2.2 years ago by ★ 1.8k • written 2.2 years ago by ▴ 100
0
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0
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1.1k
views
Comment: Comment: heatmap() in r assigning incorrect scale color to only first column values
2.3 years ago by Jen ▴ 100
2
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2
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1.1k
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heatmap() in r assigning incorrect scale color to only first column values
r heatmap
2.3 years ago by Jen ▴ 100
0
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0
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1.3k
views
Comment: Comment: Adding a continuous "wrap around" scale to heat map
2.3 years ago by Jen ▴ 100
2
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2
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1.3k
views
Adding a continuous "wrap around" scale to heat map
r heatmap
2.3 years ago by Jen ▴ 100
0
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1
reply
970
views
Regulation of differentially expressed coding and non-coding isoforms
Regulation Transcripts Isoforms
updated 2.4 years ago by ▴ 570 • written 2.4 years ago by ▴ 100
0
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1
reply
1.2k
views
GSEA application not launching
GSEA
updated 2.5 years ago by 154k • written 2.5 years ago by ▴ 100
0
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0
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926
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Comment: Comment: ChIPseeker Warning Message
2.7 years ago by Jen ▴ 100
1
vote
2
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926
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ChIPseeker Warning Message
ChIPseeker
2.7 years ago by Jen ▴ 100
5
votes
5
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2.1k
views
samtools idxstats not removing ChrM
samtools ChIP-seq
updated 2.4 years ago by 45k • written 2.7 years ago by ▴ 100
0
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1
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2.1k
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Comment: Comment: samtools idxstats not removing ChrM
2.7 years ago by Jen ▴ 100
0
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0
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2.2k
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Comment: Comment: How to annotate a MACS2 peak output file that is in tabular format?
2.7 years ago by Jen ▴ 100
3
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5
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2.2k
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How to annotate a MACS2 peak output file that is in tabular format?
Annotating ChIPseq MACS2
2.7 years ago by Jen ▴ 100
0
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0
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2.2k
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Comment: Comment: How to annotate a MACS2 peak output file that is in tabular format?
2.7 years ago by Jen ▴ 100
0
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0
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2.2k
views
Comment: Comment: How to annotate a MACS2 peak output file that is in tabular format?
2.7 years ago by Jen ▴ 100
0
votes
0
replies
705
views
Question about ChIPseeker parameters
ChIP-seq ChIPseeker R
2.7 years ago by Jen ▴ 100
0
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0
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868
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Is there a way to identify which MSTRGs (novel StringTie transcripts) are potential novel ncRNAs?
MSTRG RNAseq StringTIe ncRNA Novel Transcripts
4.8 years ago by Jen ▴ 100
0
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1
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4.1k
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Comment: C: Finding assembled transcript sequences from StringTie output
4.8 years ago by Jen ▴ 100
0
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1
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4.1k
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Comment: C: Finding assembled transcript sequences from StringTie output
4.8 years ago by Jen ▴ 100
0
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1
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4.1k
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Comment: C: Finding assembled transcript sequences from StringTie output
4.8 years ago by Jen ▴ 100
2
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7
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4.1k
views
Finding assembled transcript sequences from StringTie output
RNA-Seq StringTie Assembled Transcripts Sequences
4.8 years ago by Jen ▴ 100
0
votes
1
reply
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Jen ▴ 100
0
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1
reply
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Jen ▴ 100
0
votes
1
reply
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Jen ▴ 100
0
votes
1
reply
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Jen ▴ 100
0
votes
1
reply
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Jen ▴ 100
0
votes
1
reply
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Jen ▴ 100
0
votes
1
reply
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Jen ▴ 100
8
votes
17
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12k
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STAR and StringTie to identify novel isoforms (please check my work)
RNA-Seq STAR StringTie gffcompare novel isoforms
written 4.9 years ago by ▴ 100
0
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0
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2.3k
views
Comment: A: STAR mapping taking way too long (18hrs to complete ~60M PE reads)
updated 4.9 years ago by 154k • written 4.9 years ago by ▴ 100
0
votes
3
replies
2.3k
views
STAR mapping taking way too long (18hrs to complete ~60M PE reads)
STAR
4.9 years ago by Jen ▴ 100
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