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Comment: Comment: Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatmen
16 months ago by ramin.k2013 • 0
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2
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Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
MetaPhlAn Normalization RPKM TPM
16 months ago by ramin.k2013 • 0
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Normalization in Metagenomics Sequencing By Total Number of Reads: Pre- or Post-Filtering and the Role of Unclassified Reads
Normalization Metagenomics
updated 16 months ago by 45k • written 17 months ago by • 0
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556
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Crassphage is not identified in fecal metagenomic samples using Metaphlan3 pipeline.
crassphage metagenomics gut MetaPhlan Kraken2
3.2 years ago by ramin.k2013 • 0
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5
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2.0k
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How to identify antibiotic resistant genes in gene databases?
antibiotic Gene-Ontology GO
updated 16 months ago by 45k • written 3.4 years ago by • 0
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Comment: Comment: How to identify antibiotic resistant genes in gene databases?
3.4 years ago by ramin.k2013 • 0
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2.0k
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Comment: Comment: How to identify antibiotic resistant genes in gene databases?
3.4 years ago by ramin.k2013 • 0
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714
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How to map Uniref90 genes (IDs) to Antibiotic resistant genes databases?
CARD metagenomics Humann2 antibiotic-resistant-genes uniref
updated 16 months ago by 45k • written 3.4 years ago by • 0
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479
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How to create proteins of interest reference file for antibiotic resistant genes analysis?
ShortBRED CARD antibiotics
updated 2.7 years ago by 45k • written 3.4 years ago by • 0
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Comment: Comment: Microbial community analysis pipelines in metagenomics
3.5 years ago by ramin.k2013 • 0
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1.7k
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Comment: Comment: Microbial community analysis pipelines in metagenomics
3.5 years ago by ramin.k2013 • 0
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1.7k
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Microbial community analysis pipelines in metagenomics
metagenomics Kraken2 MetaPhlan3
updated 2.7 years ago by 45k • written 3.5 years ago by • 0
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2
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3.9k
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creating one abundance table of my samples using kraken2 output files
metagenomics visualization abundance kraken2
updated 3.7 years ago by ▴ 260 • written 3.7 years ago by • 0
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1.2k
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fail to build kraken2 database (custom and standard)
Kraken2
updated 2.6 years ago by 45k • written 3.8 years ago by • 0
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1.3k
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Comment: Comment: synthetic samples for small datasets in bioinformatics
4.0 years ago by ramin.k2013 • 0
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1.3k
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synthetic samples for small datasets in bioinformatics
statistics ML
updated 2.6 years ago by 45k • written 4.0 years ago by • 0
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1
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768
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accessing the global gut microbial gene catalogue (MEDUSA)
medusa gene-catalogue gut-microbiome
updated 16 months ago by 45k • written 4.6 years ago by • 0
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