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Comment: Comment: Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatmen
25 days ago by ramin.k2013 • 0
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2
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Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
MetaPhlAn Normalization RPKM TPM
25 days ago by ramin.k2013 • 0
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Normalization in Metagenomics Sequencing By Total Number of Reads: Pre- or Post-Filtering and the Role of Unclassified Reads
Normalization Metagenomics
updated 26 days ago by 43k • written 27 days ago by • 0
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350
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Crassphage is not identified in fecal metagenomic samples using Metaphlan3 pipeline.
crassphage metagenomics gut MetaPhlan Kraken2
23 months ago by ramin.k2013 • 0
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5
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1.3k
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How to identify antibiotic resistant genes in gene databases?
antibiotic Gene-Ontology GO
updated 26 days ago by 43k • written 2.1 years ago by • 0
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1.3k
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Comment: Comment: How to identify antibiotic resistant genes in gene databases?
2.1 years ago by ramin.k2013 • 0
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1.3k
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Comment: Comment: How to identify antibiotic resistant genes in gene databases?
2.1 years ago by ramin.k2013 • 0
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482
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How to map Uniref90 genes (IDs) to Antibiotic resistant genes databases?
CARD metagenomics Humann2 antibiotic-resistant-genes uniref
updated 26 days ago by 43k • written 2.1 years ago by • 0
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317
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How to create proteins of interest reference file for antibiotic resistant genes analysis?
ShortBRED CARD antibiotics
updated 17 months ago by 43k • written 2.1 years ago by • 0
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1.0k
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Comment: Comment: Microbial community analysis pipelines in metagenomics
2.2 years ago by ramin.k2013 • 0
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1.0k
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Comment: Comment: Microbial community analysis pipelines in metagenomics
2.2 years ago by ramin.k2013 • 0
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4
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1.0k
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Microbial community analysis pipelines in metagenomics
metagenomics Kraken2 MetaPhlan3
updated 17 months ago by 43k • written 2.2 years ago by • 0
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2
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2.8k
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creating one abundance table of my samples using kraken2 output files
metagenomics visualization abundance kraken2
updated 2.4 years ago by ▴ 230 • written 2.4 years ago by • 0
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923
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fail to build kraken2 database (custom and standard)
Kraken2
updated 15 months ago by 43k • written 2.4 years ago by • 0
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911
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Comment: Comment: synthetic samples for small datasets in bioinformatics
2.7 years ago by ramin.k2013 • 0
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3
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911
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synthetic samples for small datasets in bioinformatics
statistics ML
updated 15 months ago by 43k • written 2.7 years ago by • 0
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1
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605
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accessing the global gut microbial gene catalogue (MEDUSA)
medusa gene-catalogue gut-microbiome
updated 26 days ago by 43k • written 3.3 years ago by • 0
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