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Answer: A: Ribo-seq Analysis software
updated 5.8 years ago by 45k • written 10.9 years ago by ★ 2.2k
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1
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6.1k
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Comment: C: Calculating isoforms abundance using RNAseq data
updated 5.8 years ago by 45k • written 10.7 years ago by ★ 2.2k
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6.1k
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Answer: A: Calculating isoforms abundance using RNAseq data
updated 5.8 years ago by 45k • written 10.7 years ago by ★ 2.2k
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1
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5.3k
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Answer: A: Publicly available Rna-Seq count data
updated 5.9 years ago by 45k • written 10.3 years ago by ★ 2.2k
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1
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10k
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Comment: C: Cuffmerge running error
updated 5.9 years ago by 45k • written 10.8 years ago by ★ 2.2k
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1
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10k
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Comment: C: Cuffmerge running error
updated 5.9 years ago by 45k • written 10.8 years ago by ★ 2.2k
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1
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10k
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Comment: C: Cuffmerge running error
updated 5.9 years ago by 45k • written 10.8 years ago by ★ 2.2k
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Answer: A: how to make cufflinks produce the nuclotide sequence of the gene + 5000 upstream
updated 5.9 years ago by 45k • written 10.5 years ago by ★ 2.2k
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2
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Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 5.9 years ago by 45k • written 10.6 years ago by ★ 2.2k
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1
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17k
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Answer: Answer: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 3.4 years ago by 45k • written 10.6 years ago by ★ 2.2k
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10k
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Answer: A: How to check the bam file of read quality with graphically visual?
updated 5.9 years ago by 45k • written 10.9 years ago by ★ 2.2k
0
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0
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Comment: C: Convert A Psl File To A Sam File And Also Write Sequences To The Sam File?
updated 5.9 years ago by 45k • written 10.9 years ago by ★ 2.2k
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Comment: C: Trinity works on my PC
updated 5.9 years ago by 45k • written 11.0 years ago by ★ 2.2k
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1
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33k
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Comment: C: convert FASTA into FASTQ using linux
updated 6.8 years ago by 45k • written 10.9 years ago by ★ 2.2k
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4
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Answer: A: convert FASTA into FASTQ using linux
updated 6.8 years ago by 45k • written 10.9 years ago by ★ 2.2k
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3.6k
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Comment: C: Gene lists and calculated Ka/Ks ratio per gene
8.2 years ago by Manvendra Singh ★ 2.2k
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2.8k
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Answer: A: retrieve genomic coordinate on mRNA
8.2 years ago by Manvendra Singh ★ 2.2k
1
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0
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2.2k
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Comment: C: Any tools to detect lncRNAs from RNA-seq data?
8.6 years ago by Manvendra Singh ★ 2.2k
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1
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6.7k
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Answer: A: Intersecting vcf files with bedtools
8.6 years ago by Manvendra Singh ★ 2.2k
1
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1
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3.1k
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Answer: A: Statistical significance in phylogenies
8.6 years ago by Manvendra Singh ★ 2.2k
1
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1
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6.8k
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Answer: A: STAR aligner fails to produce unmapped file
8.8 years ago by Manvendra Singh ★ 2.2k
1
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0
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6.1k
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Answer: A: getfasta command requires a bedfile template of some sort
updated 8.9 years ago by 153k • written 8.9 years ago by ★ 2.2k
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2.9k
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Answer: A: Metabolic gene database: The most-frequently mutated metabolic genes in human ca
8.9 years ago by Manvendra Singh ★ 2.2k
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2.0k
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Answer: A: Non-coding RNA Atlas
8.9 years ago by Manvendra Singh ★ 2.2k
0
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1
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4.2k
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Comment: C: Overrepresented sequence in RNA-seq only in R2
8.9 years ago by Manvendra Singh ★ 2.2k
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0
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4.5k
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Answer: A: Ensembl transcript ID - BioMart retrieval
8.9 years ago by Manvendra Singh ★ 2.2k
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0
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1.9k
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Answer: A: Gene expression in populations
8.9 years ago by Manvendra Singh ★ 2.2k
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1
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5.2k
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Answer: A: Differential isoform expression analyses
8.9 years ago by Manvendra Singh ★ 2.2k
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3.4k
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Answer: A: Identify the isoform of a transcript using RNA Seq data
9.0 years ago by Manvendra Singh ★ 2.2k
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0
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6.1k
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Comment: Comment: Comparing gene expression profiles between species
updated 3.5 years ago by 45k • written 9.0 years ago by ★ 2.2k
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0
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4.3k
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Answer: A: Merging expression data from multiple platforms
9.1 years ago by Manvendra Singh ★ 2.2k
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2
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3.1k
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Answer: A: Time series microarray data
9.1 years ago by Manvendra Singh ★ 2.2k
0
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1
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8.0k
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Comment: Comment: Endogenous Retrovirus Expression from RNA-Seq
updated 3.5 years ago by 45k • written 10.7 years ago by ★ 2.2k
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0
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20k
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Comment: C: GO analysis- analyze upregulated and downregulated genes separately?
10.1 years ago by Manvendra Singh ★ 2.2k
1
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0
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3.6k
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Why the resuming tophat2 command gives a strange error of samtools version?
RNA-Seq tophat2 mapping
updated 3.0 years ago by 45k • written 10.1 years ago by ★ 2.2k
0
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1
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6.4k
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Comment: Comment: Why is DESeq a better method for finding highly upregulated and downregulated ge
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.2k
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0
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6.4k
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Comment: C: Why is DESeq a better method for finding highly upregulated and downregulated ge
10.1 years ago by Manvendra Singh ★ 2.2k
0
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0
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6.4k
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Comment: C: Why is DESeq a better method for finding highly upregulated and downregulated ge
10.1 years ago by Manvendra Singh ★ 2.2k
0
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1
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5.4k
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Comment: C: Differential expression analysis using Limma (Not on cel files)
10.2 years ago by Manvendra Singh ★ 2.2k
0
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0
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4.2k
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Comment: C: ChIP-Seq contaminated by human tissue?
10.2 years ago by Manvendra Singh ★ 2.2k
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0
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2.2k
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Answer: A: GFF model in Tophat and/or Cufflinks?
10.2 years ago by Manvendra Singh ★ 2.2k
2
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1
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9.9k
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Answer: A: removing outliers from RNA-seq data
10.2 years ago by Manvendra Singh ★ 2.2k
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0
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2.7k
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Comment: C: Batch Retrieval of Coding Sequences
10.2 years ago by Manvendra Singh ★ 2.2k
0
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1
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8.6k
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Comment: C: Getting transcript annotation in BED format along with reference seq.
10.2 years ago by Manvendra Singh ★ 2.2k
0
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1
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8.6k
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Comment: Comment: Getting transcript annotation in BED format along with reference seq.
updated 2.7 years ago by 45k • written 10.2 years ago by ★ 2.2k
1
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0
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3.5k
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Comment: Comment: I need to know how to trimming RNAseq of GEO dataset.
updated 2.7 years ago by 45k • written 10.2 years ago by ★ 2.2k
1
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1
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2.7k
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Answer: Answer: Batch Retrieval of Coding Sequences
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 2.2k
1
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0
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3.2k
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Comment: Comment: What is the best way to get help on Bioconductor packages?
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 2.2k
0
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1
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3.2k
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Comment: C: What is the best way to get help on Bioconductor packages?
10.3 years ago by Manvendra Singh ★ 2.2k
1
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0
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3.1k
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Comment: Comment: Differentially expressed microRNA analysis using bowtie2-cufflink-cuffdiff
updated 2.7 years ago by 45k • written 10.3 years ago by ★ 2.2k
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