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Answer: A: Tophat Rna-Seq Mapping Quality
updated 5.5 years ago by 45k • written 12.2 years ago by 4.8k
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1
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5.2k
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Comment: C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
updated 5.7 years ago by 45k • written 11.1 years ago by 4.8k
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3
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Answer: A: Cufflinks Or Alternative From Bwa Alignments?
updated 5.7 years ago by 45k • written 13.2 years ago by 4.8k
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Comment: C: Best Peak Caller For Histone Modifications (Mainly H3K4Me3) Chip-Seq Datasets?
updated 5.7 years ago by 45k • written 14.1 years ago by 4.8k
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Comment: C: How To Process Large Chipseq Data?
updated 5.7 years ago by 45k • written 15.0 years ago by 4.8k
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2
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Answer: A: Dna Sequencers Output Read Length - Now
updated 5.7 years ago by 45k • written 13.3 years ago by 4.8k
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2
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6.2k
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Answer: A: Which Mappability Track To Use?
updated 5.8 years ago by 45k • written 13.4 years ago by 4.8k
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0
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2.7k
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Answer: A: What Is The Easiest Way To Obtain The Reference Sequence For All The Human Genom
updated 5.8 years ago by 45k • written 13.6 years ago by 4.8k
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1
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18k
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Comment: C: Can We Compare Two Different Rna-Seq Experiments?
updated 6.4 years ago by 45k • written 11.7 years ago by 4.8k
2
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1
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18k
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Answer: A: Can We Compare Two Different Rna-Seq Experiments?
updated 6.4 years ago by 45k • written 11.7 years ago by 4.8k
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0
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5.5k
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Answer: A: Replicates In Chip-Seq
updated 6.4 years ago by 45k • written 11.8 years ago by 4.8k
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4.2k
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Answer: A: Why can't I replicate DESeq's Log2FC calculation?
updated 6.8 years ago by 45k • written 9.3 years ago by 4.8k
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0
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3.7k
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Answer: A: Data banks for mouse expression data
updated 6.8 years ago by 45k • written 9.3 years ago by 4.8k
4
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6.3k
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Answer: A: How To Do Quality Trimming Of Solid Reads In Colour Space?
updated 7.2 years ago by 35k • written 15.3 years ago by 4.8k
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5.3k
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Comment: C: pareto scaling of RMA normalised values for Principle component analysis (PCA)
8.7 years ago by Mikael Huss 4.8k
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1
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5.3k
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Comment: C: pareto scaling of RMA normalised values for Principle component analysis (PCA)
8.7 years ago by Mikael Huss 4.8k
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1
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5.3k
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Answer: A: pareto scaling of RMA normalised values for Principle component analysis (PCA)
8.7 years ago by Mikael Huss 4.8k
2
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0
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12k
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Answer: A: how to return the componenets from PCA back to original variables?
8.7 years ago by Mikael Huss 4.8k
25
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15
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14k
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8 follow
Best Way To Quantify Influence Of Different Covariates On Gene Expression?
rna-seq microarray
updated 9.0 years ago by ▴ 400 • written 11.2 years ago by 4.8k
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8.0k
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Comment: C: How to retrieve protein sequences in Diamond?
9.2 years ago by Mikael Huss 4.8k
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8.0k
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Comment: C: How to retrieve protein sequences in Diamond?
9.2 years ago by Mikael Huss 4.8k
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1
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8.0k
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Answer: A: How to retrieve protein sequences in Diamond?
9.2 years ago by Mikael Huss 4.8k
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1
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3.9k
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Answer: A: How to tell viruses/bacteria found in human brain Rna-seq samples are intrinsic
9.2 years ago by Mikael Huss 4.8k
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0
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9.3k
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Answer: A: Variant caller for low frequency variants
9.3 years ago by Mikael Huss 4.8k
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0
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2.4k
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Answer: A: Accessing Expression Levels for Genes of Interest from GEO Experiments
9.3 years ago by Mikael Huss 4.8k
2
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1
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2.2k
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Answer: A: Short sequences against short sequences alignment
9.3 years ago by Mikael Huss 4.8k
8
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8.0k
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Answer: A: Bioinformatics + Deep Learning
9.4 years ago by Mikael Huss 4.8k
2
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0
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5.9k
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Answer: A: Calculating isoforms abundance using RNAseq data
9.7 years ago by Mikael Huss 4.8k
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0
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20k
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Comment: Comment: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
updated 2.7 years ago by 45k • written 9.9 years ago by 4.8k
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6.7k
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Comment: Comment: The new era of bioinformatics: simple and fast tools, fewer and more informative
updated 2.4 years ago by 45k • written 10.1 years ago by 4.8k
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0
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3.7k
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Comment: C: Need suggestions for rna-seq pipeline.
10.2 years ago by Mikael Huss 4.8k
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0
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8.2k
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Comment: Comment: "big" Data csv search
updated 3.1 years ago by 45k • written 10.3 years ago by 4.8k
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1
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8.2k
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Comment: C: "big" Data csv search
10.3 years ago by Mikael Huss 4.8k
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1
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5.9k
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Comment: Comment: Comparing gene expression profiles between species
updated 3.2 years ago by 45k • written 10.4 years ago by 4.8k
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9
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5.9k
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Comparing gene expression profiles between species
phenotype species gene-expression
updated 3.2 years ago by 45k • written 10.4 years ago by 4.8k
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1
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5.9k
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Comment: C: Comparing gene expression profiles between species
10.4 years ago by Mikael Huss 4.8k
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0
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34k
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Answer: A: List Of Cloud Genomics Companies
10.4 years ago by Mikael Huss 4.8k
0
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1
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3.7k
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Comment: C: Should I remove host RNA from host-pathogen metatranscriptomic data
10.4 years ago by Mikael Huss 4.8k
2
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1
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3.7k
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Answer: Answer: Should I remove host RNA from host-pathogen metatranscriptomic data
updated 3.2 years ago by 45k • written 10.4 years ago by 4.8k
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1
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3.7k
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Comment: C: Should I remove host RNA from host-pathogen metatranscriptomic data
10.4 years ago by Mikael Huss 4.8k
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1
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2.6k
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Answer: A: Detection of viral nucleic acids in metagenomic aDNA samples
10.5 years ago by Mikael Huss 4.8k
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1
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18k
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Comment: C: Normalization Procedure For The Rna-Seq Data Based On Counts
10.5 years ago by Mikael Huss 4.8k
6
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1
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7.3k
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Answer: A: What are the best approaches to evaluate a genome assembly using the 'intrinsic'
10.5 years ago by Mikael Huss 4.8k
1
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1
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3.8k
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Answer: Answer: Database of common contaminants in human genome assemblies
updated 3.3 years ago by 45k • written 10.5 years ago by 4.8k
4
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0
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21k
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Answer: Answer: Why is Hadoop not used a lot in bio-informatics?
updated 3.4 years ago by 45k • written 10.7 years ago by 4.8k
4
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0
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4.6k
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Answer: A: Assembly of whole metagenomics data
10.7 years ago by Mikael Huss 4.8k
2
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1
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4.4k
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Answer: A: Are polyA tails filtered at some step of tophat/cufflinks processing or this inf
10.9 years ago by Mikael Huss 4.8k
1
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1
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13k
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Comment: Comment: DESeq2 very high p-values and padj
updated 3.5 years ago by 45k • written 10.9 years ago by 4.8k
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0
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11k
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Answer: Answer: How can I find the official gene ID correspond to the CUFF ID in cufflinks outpu
updated 3.5 years ago by 45k • written 10.9 years ago by 4.8k
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0
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6.8k
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Comment: C: Homer: Different Outputs
11.0 years ago by Mikael Huss 4.8k
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