Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
12k
views
Answer: A: Tophat Rna-Seq Mapping Quality
updated 4.6 years ago by 44k • written 11.3 years ago by 4.8k
1
vote
1
reply
4.8k
views
Comment: C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
updated 4.8 years ago by 44k • written 10.2 years ago by 4.8k
2
votes
3
replies
5.2k
views
Answer: A: Cufflinks Or Alternative From Bwa Alignments?
updated 4.8 years ago by 44k • written 12.3 years ago by 4.8k
0
votes
0
replies
12k
views
Comment: C: Best Peak Caller For Histone Modifications (Mainly H3K4Me3) Chip-Seq Datasets?
updated 4.8 years ago by 44k • written 13.2 years ago by 4.8k
0
votes
0
replies
3.5k
views
Comment: C: How To Process Large Chipseq Data?
updated 4.8 years ago by 44k • written 14.1 years ago by 4.8k
1
vote
2
replies
1.9k
views
Answer: A: Dna Sequencers Output Read Length - Now
updated 4.8 years ago by 44k • written 12.4 years ago by 4.8k
4
votes
2
replies
5.3k
views
Answer: A: Which Mappability Track To Use?
updated 4.9 years ago by 44k • written 12.5 years ago by 4.8k
3
votes
0
replies
2.2k
views
Answer: A: What Is The Easiest Way To Obtain The Reference Sequence For All The Human Genom
updated 4.9 years ago by 44k • written 12.7 years ago by 4.8k
2
votes
1
reply
17k
views
Comment: C: Can We Compare Two Different Rna-Seq Experiments?
updated 5.5 years ago by 44k • written 10.8 years ago by 4.8k
2
votes
1
reply
17k
views
Answer: A: Can We Compare Two Different Rna-Seq Experiments?
updated 5.5 years ago by 44k • written 10.8 years ago by 4.8k
1
vote
0
replies
4.8k
views
Answer: A: Replicates In Chip-Seq
updated 5.5 years ago by 44k • written 10.9 years ago by 4.8k
6
votes
0
replies
3.9k
views
Answer: A: Why can't I replicate DESeq's Log2FC calculation?
updated 5.9 years ago by 44k • written 8.4 years ago by 4.8k
1
vote
0
replies
2.8k
views
Answer: A: Data banks for mouse expression data
updated 5.9 years ago by 44k • written 8.4 years ago by 4.8k
4
votes
0
replies
5.8k
views
Answer: A: How To Do Quality Trimming Of Solid Reads In Colour Space?
updated 6.3 years ago by 35k • written 14.4 years ago by 4.8k
1
vote
0
replies
4.6k
views
Comment: C: pareto scaling of RMA normalised values for Principle component analysis (PCA)
7.8 years ago by Mikael Huss 4.8k
1
vote
1
reply
4.6k
views
Comment: C: pareto scaling of RMA normalised values for Principle component analysis (PCA)
7.8 years ago by Mikael Huss 4.8k
0
votes
1
reply
4.6k
views
Answer: A: pareto scaling of RMA normalised values for Principle component analysis (PCA)
7.8 years ago by Mikael Huss 4.8k
2
votes
0
replies
11k
views
Answer: A: how to return the componenets from PCA back to original variables?
7.8 years ago by Mikael Huss 4.8k
25
votes
15
replies
13k
views
8 follow
Best Way To Quantify Influence Of Different Covariates On Gene Expression?
rna-seq microarray
updated 8.1 years ago by ▴ 400 • written 10.3 years ago by 4.8k
0
votes
0
replies
7.2k
views
Comment: C: How to retrieve protein sequences in Diamond?
8.3 years ago by Mikael Huss 4.8k
0
votes
0
replies
7.2k
views
Comment: C: How to retrieve protein sequences in Diamond?
8.3 years ago by Mikael Huss 4.8k
0
votes
1
reply
7.2k
views
Answer: A: How to retrieve protein sequences in Diamond?
8.3 years ago by Mikael Huss 4.8k
1
vote
1
reply
3.4k
views
Answer: A: How to tell viruses/bacteria found in human brain Rna-seq samples are intrinsic
8.3 years ago by Mikael Huss 4.8k
1
vote
0
replies
8.1k
views
Answer: A: Variant caller for low frequency variants
8.4 years ago by Mikael Huss 4.8k
0
votes
0
replies
2.0k
views
Answer: A: Accessing Expression Levels for Genes of Interest from GEO Experiments
8.4 years ago by Mikael Huss 4.8k
2
votes
1
reply
1.8k
views
Answer: A: Short sequences against short sequences alignment
8.4 years ago by Mikael Huss 4.8k
8
votes
0
replies
7.5k
views
Answer: A: Bioinformatics + Deep Learning
8.5 years ago by Mikael Huss 4.8k
2
votes
0
replies
4.8k
views
Answer: A: Calculating isoforms abundance using RNAseq data
8.8 years ago by Mikael Huss 4.8k
1
vote
0
replies
19k
views
Comment: Comment: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
updated 21 months ago by 44k • written 9.0 years ago by 4.8k
0
votes
0
replies
5.8k
views
Comment: Comment: The new era of bioinformatics: simple and fast tools, fewer and more informative
updated 18 months ago by 44k • written 9.2 years ago by 4.8k
1
vote
0
replies
3.3k
views
Comment: C: Need suggestions for rna-seq pipeline.
9.3 years ago by Mikael Huss 4.8k
1
vote
0
replies
7.2k
views
Comment: Comment: "big" Data csv search
updated 2.2 years ago by 44k • written 9.4 years ago by 4.8k
1
vote
1
reply
7.2k
views
Comment: C: "big" Data csv search
9.4 years ago by Mikael Huss 4.8k
0
votes
1
reply
5.1k
views
Comment: Comment: Comparing gene expression profiles between species
updated 2.3 years ago by 44k • written 9.5 years ago by 4.8k
4
votes
9
replies
5.1k
views
Comparing gene expression profiles between species
phenotype species gene-expression
updated 2.3 years ago by 44k • written 9.5 years ago by 4.8k
0
votes
1
reply
5.1k
views
Comment: C: Comparing gene expression profiles between species
9.5 years ago by Mikael Huss 4.8k
1
vote
0
replies
31k
views
Answer: A: List Of Cloud Genomics Companies
9.5 years ago by Mikael Huss 4.8k
0
votes
1
reply
3.2k
views
Comment: C: Should I remove host RNA from host-pathogen metatranscriptomic data
9.5 years ago by Mikael Huss 4.8k
2
votes
1
reply
3.2k
views
Answer: Answer: Should I remove host RNA from host-pathogen metatranscriptomic data
updated 2.3 years ago by 44k • written 9.5 years ago by 4.8k
0
votes
1
reply
3.2k
views
Comment: C: Should I remove host RNA from host-pathogen metatranscriptomic data
9.5 years ago by Mikael Huss 4.8k
1
vote
1
reply
2.1k
views
Answer: A: Detection of viral nucleic acids in metagenomic aDNA samples
9.6 years ago by Mikael Huss 4.8k
0
votes
1
reply
17k
views
Comment: C: Normalization Procedure For The Rna-Seq Data Based On Counts
9.6 years ago by Mikael Huss 4.8k
6
votes
1
reply
6.7k
views
Answer: A: What are the best approaches to evaluate a genome assembly using the 'intrinsic'
9.6 years ago by Mikael Huss 4.8k
1
vote
1
reply
3.4k
views
Answer: Answer: Database of common contaminants in human genome assemblies
updated 2.4 years ago by 44k • written 9.6 years ago by 4.8k
4
votes
0
replies
20k
views
Answer: Answer: Why is Hadoop not used a lot in bio-informatics?
updated 2.5 years ago by 44k • written 9.8 years ago by 4.8k
4
votes
0
replies
4.1k
views
Answer: A: Assembly of whole metagenomics data
9.8 years ago by Mikael Huss 4.8k
2
votes
1
reply
3.8k
views
Answer: A: Are polyA tails filtered at some step of tophat/cufflinks processing or this inf
10.0 years ago by Mikael Huss 4.8k
1
vote
1
reply
12k
views
Comment: Comment: DESeq2 very high p-values and padj
updated 2.6 years ago by 44k • written 10.0 years ago by 4.8k
1
vote
0
replies
10k
views
Answer: Answer: How can I find the official gene ID correspond to the CUFF ID in cufflinks outpu
updated 2.6 years ago by 44k • written 10.0 years ago by 4.8k
0
votes
0
replies
6.3k
views
Comment: C: Homer: Different Outputs
10.1 years ago by Mikael Huss 4.8k
293 results • Page 1 of 6
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6