Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
0
replies
1.5k
views
Answer: A: GWAS result too significant
5.9 years ago by chrchang523 11k
0
votes
0
replies
1.0k
views
Comment: C: confusing vcf file
5.9 years ago by chrchang523 11k
1
vote
1
reply
1.0k
views
Answer: A: confusing vcf file
5.9 years ago by chrchang523 11k
1
vote
0
replies
2.8k
views
Answer: A: Extract samples from a bcf files based on genotype?
5.9 years ago by chrchang523 11k
1
vote
0
replies
4.9k
views
Comment: C: IBD calculation with Plink
5.9 years ago by chrchang523 11k
4
votes
1
reply
4.9k
views
Answer: A: IBD calculation with Plink
5.9 years ago by chrchang523 11k
1
vote
1
reply
2.0k
views
Comment: C: Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
6.0 years ago by chrchang523 11k
1
vote
1
reply
2.0k
views
Answer: A: Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
6.0 years ago by chrchang523 11k
3
votes
0
replies
24k
views
Answer: C: Merging bed bim fam files from chromosome 1 to 22 at one time
6.0 years ago by chrchang523 11k
0
votes
0
replies
4.9k
views
Comment: C: Recoding lgen into Ped using plink
updated 6.0 years ago by 45k • written 10.0 years ago by 11k
0
votes
2
replies
4.9k
views
Comment: C: Recoding lgen into Ped using plink
updated 6.0 years ago by 45k • written 10.0 years ago by 11k
2
votes
2
replies
2.4k
views
Answer: A: Why Plink stoped analyzing without make a new PED file and MAP file?
updated 6.0 years ago by 45k • written 10.0 years ago by 11k
4
votes
1
reply
1.9k
views
Comment: C: VCF file format
updated 6.0 years ago by 45k • written 10.1 years ago by 11k
2
votes
0
replies
5.3k
views
Answer: C: How to convert vcf to impute2 format?
updated 6.0 years ago by 45k • written 10.1 years ago by 11k
4
votes
1
reply
3.0k
views
Answer: A: How to check how much loading each SNP had on the first or second principal comp
6.0 years ago by chrchang523 11k
2
votes
0
replies
2.6k
views
Comment: C: PLINK file format case control status
6.0 years ago by chrchang523 11k
1
vote
0
replies
5.6k
views
Comment: C: Permutation using Plink
6.0 years ago by chrchang523 11k
0
votes
0
replies
1.1k
views
Answer: A: Plink allele with frequency greater than 0.05
6.0 years ago by chrchang523 11k
0
votes
0
replies
2.9k
views
Comment: C: Any fast way to download 1000 Genome Phase 3?
6.0 years ago by chrchang523 11k
0
votes
0
replies
58k
views
Answer: C: PLINK: merge .bed files
updated 6.0 years ago by 45k • written 10.3 years ago by 11k
0
votes
0
replies
899
views
Answer: A: How to Select A Given Subset of SNPs from the 1000GP Dataset?
6.0 years ago by chrchang523 11k
5
votes
0
replies
7.9k
views
Answer: A: How to convert PLINK data files to bgen and bgen.bgi files?
6.0 years ago by chrchang523 11k
0
votes
0
replies
1.8k
views
Answer: A: remove singletons in LD pruning in plink
6.0 years ago by chrchang523 11k
1
vote
1
reply
1.8k
views
Answer: A: PCA with Plink1.9 - eigenval and eigenvec files are all 0
6.0 years ago by chrchang523 11k
0
votes
1
reply
4.0k
views
Answer: A: Filtering for individual allelic balance in multisample vcf using GATK4
6.0 years ago by chrchang523 11k
3
votes
0
replies
6.2k
views
Answer: A: GPU based parallel processing in genomics tools
6.0 years ago by chrchang523 11k
1
vote
1
reply
1.3k
views
Answer: A: How to create a data of genotypes for each SNP for each individual
6.0 years ago by chrchang523 11k
2
votes
2
replies
18k
views
Answer: A: how to count variants par sample per chromosome in a vcf file?
6.0 years ago by chrchang523 11k
1
vote
0
replies
2.1k
views
Answer: A: PLINK BED format: how interpret 0, 1, 2
6.0 years ago by chrchang523 11k
0
votes
1
reply
4.8k
views
Comment: C: PLINK: missing covariates?
6.1 years ago by chrchang523 11k
1
vote
0
replies
2.0k
views
Comment: C: Plink --score generates different output for same dataset
6.1 years ago by chrchang523 11k
0
votes
0
replies
12k
views
Answer: A: PLINK format to EIGENSTRAT format
updated 6.1 years ago by 45k • written 11.1 years ago by 11k
0
votes
1
reply
11k
views
Comment: C: Calculate population allele frequencies from a vcf file including multiple popul
6.1 years ago by chrchang523 11k
3
votes
0
replies
1.5k
views
Answer: A: Genotype frequency from ped or vcf files
6.1 years ago by chrchang523 11k
3
votes
1
reply
11k
views
Answer: A: Calculate population allele frequencies from a vcf file including multiple popul
6.1 years ago by chrchang523 11k
1
vote
0
replies
11k
views
Comment: C: Calculate population allele frequencies from a vcf file including multiple popul
6.1 years ago by chrchang523 11k
2
votes
1
reply
1.4k
views
Answer: C: Plink logistic regression algorithm: How can it compute the standard error for e
6.1 years ago by chrchang523 11k
10
votes
2
replies
10k
views
Answer: A: Plotting file eigenvec
updated 6.1 years ago by 12k • written 11.5 years ago by 11k
1
vote
0
replies
10k
views
Comment: C: Plotting file eigenvec
6.1 years ago by chrchang523 11k
0
votes
0
replies
1.8k
views
Answer: A: Input for VariantsToBinaryPed
6.1 years ago by chrchang523 11k
0
votes
0
replies
4.2k
views
Comment: C: find siblings by comparing vcf files
6.2 years ago by chrchang523 11k
1
vote
1
reply
4.2k
views
Answer: A: find siblings by comparing vcf files
6.2 years ago by chrchang523 11k
2
votes
1
reply
4.1k
views
Answer: C: Association test in Plink
updated 6.2 years ago by 12k • written 6.2 years ago by 11k
0
votes
1
reply
4.1k
views
Comment: C: Association test in Plink
6.2 years ago by chrchang523 11k
0
votes
1
reply
4.1k
views
Comment: C: Association test in Plink
6.2 years ago by chrchang523 11k
0
votes
1
reply
4.1k
views
Comment: C: Association test in Plink
6.2 years ago by chrchang523 11k
2
votes
1
reply
46k
views
Comment: C: 1000 Genomes Ld Calculation
updated 6.2 years ago by 45k • written 11.8 years ago by 11k
0
votes
0
replies
5.6k
views
Comment: C: merging GWAS data sets in Plink, error message: merge-equal-pos failure. Varian
6.2 years ago by chrchang523 11k
0
votes
1
reply
2.8k
views
Answer: A: How does plink calculates linkage disequilibrium (r2) in unphased data?
6.2 years ago by chrchang523 11k
0
votes
0
replies
2.3k
views
Comment: C: Error: Duplicate ID '26:42' generated by --set-missing-var-ids.
updated 6.2 years ago by 45k • written 6.2 years ago by 11k
914 results • Page 10 of 19
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6