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2
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0
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1.4k
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Answer: A: GWAS result too significant
5.8 years ago by chrchang523 11k
0
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0
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967
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Comment: C: confusing vcf file
5.8 years ago by chrchang523 11k
1
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1
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967
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Answer: A: confusing vcf file
5.8 years ago by chrchang523 11k
1
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0
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2.7k
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Answer: A: Extract samples from a bcf files based on genotype?
5.8 years ago by chrchang523 11k
1
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0
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4.7k
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Comment: C: IBD calculation with Plink
5.8 years ago by chrchang523 11k
4
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1
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4.7k
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Answer: A: IBD calculation with Plink
5.8 years ago by chrchang523 11k
1
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1
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1.9k
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Comment: C: Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
5.8 years ago by chrchang523 11k
1
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1
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1.9k
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Answer: A: Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
5.8 years ago by chrchang523 11k
3
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0
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24k
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Answer: C: Merging bed bim fam files from chromosome 1 to 22 at one time
5.8 years ago by chrchang523 11k
0
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0
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4.7k
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Comment: C: Recoding lgen into Ped using plink
updated 5.8 years ago by 45k • written 9.9 years ago by 11k
0
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2
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4.7k
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Comment: C: Recoding lgen into Ped using plink
updated 5.8 years ago by 45k • written 9.9 years ago by 11k
2
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2
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2.3k
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Answer: A: Why Plink stoped analyzing without make a new PED file and MAP file?
updated 5.8 years ago by 45k • written 9.9 years ago by 11k
4
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1
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1.8k
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Comment: C: VCF file format
updated 5.8 years ago by 45k • written 9.9 years ago by 11k
2
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0
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5.2k
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Answer: C: How to convert vcf to impute2 format?
updated 5.8 years ago by 45k • written 9.9 years ago by 11k
4
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1
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2.9k
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Answer: A: How to check how much loading each SNP had on the first or second principal comp
5.8 years ago by chrchang523 11k
2
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0
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2.5k
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Comment: C: PLINK file format case control status
5.8 years ago by chrchang523 11k
1
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0
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5.5k
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Comment: C: Permutation using Plink
5.8 years ago by chrchang523 11k
0
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0
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1.0k
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Answer: A: Plink allele with frequency greater than 0.05
5.8 years ago by chrchang523 11k
0
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0
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2.6k
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Comment: C: Any fast way to download 1000 Genome Phase 3?
5.9 years ago by chrchang523 11k
0
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0
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57k
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Answer: C: PLINK: merge .bed files
updated 5.9 years ago by 45k • written 10.1 years ago by 11k
0
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0
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849
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Answer: A: How to Select A Given Subset of SNPs from the 1000GP Dataset?
5.9 years ago by chrchang523 11k
5
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0
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7.7k
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Answer: A: How to convert PLINK data files to bgen and bgen.bgi files?
5.9 years ago by chrchang523 11k
0
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0
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1.7k
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Answer: A: remove singletons in LD pruning in plink
5.9 years ago by chrchang523 11k
1
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1
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1.8k
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Answer: A: PCA with Plink1.9 - eigenval and eigenvec files are all 0
5.9 years ago by chrchang523 11k
0
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1
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3.7k
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Answer: A: Filtering for individual allelic balance in multisample vcf using GATK4
5.9 years ago by chrchang523 11k
3
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0
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5.9k
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Answer: A: GPU based parallel processing in genomics tools
5.9 years ago by chrchang523 11k
1
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1
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1.2k
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Answer: A: How to create a data of genotypes for each SNP for each individual
5.9 years ago by chrchang523 11k
2
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2
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18k
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Answer: A: how to count variants par sample per chromosome in a vcf file?
5.9 years ago by chrchang523 11k
1
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0
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2.0k
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Answer: A: PLINK BED format: how interpret 0, 1, 2
5.9 years ago by chrchang523 11k
0
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1
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4.7k
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Comment: C: PLINK: missing covariates?
5.9 years ago by chrchang523 11k
1
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0
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2.0k
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Comment: C: Plink --score generates different output for same dataset
5.9 years ago by chrchang523 11k
0
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0
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12k
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Answer: A: PLINK format to EIGENSTRAT format
updated 5.9 years ago by 45k • written 11.0 years ago by 11k
0
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1
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10k
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Comment: C: Calculate population allele frequencies from a vcf file including multiple popul
5.9 years ago by chrchang523 11k
3
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0
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1.5k
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Answer: A: Genotype frequency from ped or vcf files
5.9 years ago by chrchang523 11k
3
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1
reply
10k
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Answer: A: Calculate population allele frequencies from a vcf file including multiple popul
5.9 years ago by chrchang523 11k
1
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0
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10k
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Comment: C: Calculate population allele frequencies from a vcf file including multiple popul
5.9 years ago by chrchang523 11k
2
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1
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1.3k
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Answer: C: Plink logistic regression algorithm: How can it compute the standard error for e
6.0 years ago by chrchang523 11k
10
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2
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9.9k
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Answer: A: Plotting file eigenvec
updated 6.0 years ago by 12k • written 11.4 years ago by 11k
1
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0
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9.9k
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Comment: C: Plotting file eigenvec
6.0 years ago by chrchang523 11k
0
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0
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1.7k
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Answer: A: Input for VariantsToBinaryPed
6.0 years ago by chrchang523 11k
0
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0
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4.1k
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Comment: C: find siblings by comparing vcf files
6.0 years ago by chrchang523 11k
1
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1
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4.1k
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Answer: A: find siblings by comparing vcf files
6.0 years ago by chrchang523 11k
2
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1
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4.0k
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Answer: C: Association test in Plink
updated 6.0 years ago by 12k • written 6.0 years ago by 11k
0
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1
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4.0k
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Comment: C: Association test in Plink
6.0 years ago by chrchang523 11k
0
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1
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4.0k
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Comment: C: Association test in Plink
6.0 years ago by chrchang523 11k
0
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1
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4.0k
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Comment: C: Association test in Plink
6.0 years ago by chrchang523 11k
2
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1
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45k
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Comment: C: 1000 Genomes Ld Calculation
updated 6.0 years ago by 45k • written 11.7 years ago by 11k
0
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0
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5.5k
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Comment: C: merging GWAS data sets in Plink, error message: merge-equal-pos failure. Varian
6.0 years ago by chrchang523 11k
0
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1
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2.6k
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Answer: A: How does plink calculates linkage disequilibrium (r2) in unphased data?
6.1 years ago by chrchang523 11k
0
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0
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2.2k
views
Comment: C: Error: Duplicate ID '26:42' generated by --set-missing-var-ids.
updated 6.1 years ago by 45k • written 6.1 years ago by 11k
914 results • Page 10 of 19
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