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1.4k
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Answer: A: pseudochromosomes in VCFtools
6.6 years ago by chrchang523 11k
12
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0
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11k
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Answer: A: PLINK: Error: Invalid chromosome code 'chr11_KI0721v1_random'
6.7 years ago by chrchang523 11k
0
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0
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3.5k
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Comment: C: How to recode VCF from bed bim and fam files in plink with filter?
6.7 years ago by chrchang523 11k
0
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1
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3.5k
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Answer: A: How to recode VCF from bed bim and fam files in plink with filter?
6.7 years ago by chrchang523 11k
0
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0
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3.1k
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Comment: C: PLINK: Identical A1 and A2 alleles on line 215
6.7 years ago by chrchang523 11k
1
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1
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3.1k
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Answer: A: PLINK: Identical A1 and A2 alleles on line 215
6.7 years ago by chrchang523 11k
0
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0
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3.6k
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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
6.7 years ago by chrchang523 11k
0
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1
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3.6k
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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
6.7 years ago by chrchang523 11k
0
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1
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3.6k
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Answer: A: How to extract proxy SNPs using 1000G vcf for a list of SNPs
6.7 years ago by chrchang523 11k
1
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0
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1.1k
views
Answer: A: PLINK Clump function represent a region by a single region (rank 1)
6.7 years ago by chrchang523 11k
2
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1
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2.4k
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Comment: C: Get SNP information with association test with PLINK
6.7 years ago by chrchang523 11k
2
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1
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2.4k
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Answer: C: Get SNP information with association test with PLINK
6.7 years ago by chrchang523 11k
4
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1
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4.5k
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Answer: A: Fast way to return genomic regions for 10,000 SNPs in rsID
6.7 years ago by chrchang523 11k
1
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0
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2.1k
views
Answer: A: How to process Plink2 --score across chromosomes
6.7 years ago by chrchang523 11k
2
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0
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2.0k
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Answer: A: PLINK --r2 square: snp ids are not written
6.7 years ago by chrchang523 11k
1
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0
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4.3k
views
Answer: A: Error: --score takes at most three numeric parameters.
6.7 years ago by chrchang523 11k
4
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1
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7.2k
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Answer: A: PLINK dosage data - convert and/or read in R
6.7 years ago by chrchang523 11k
2
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0
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2.3k
views
Answer: A: Plink2. psam file missing in 1000G Phase3
6.7 years ago by chrchang523 11k
2
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1
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9.1k
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Comment: C: Plink Error: Duplicate ID 'chr:pos:A1:A2' generated by --set-missing-var-ids
6.8 years ago by chrchang523 11k
1
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1
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8.9k
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Comment: C: Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inf
6.8 years ago by chrchang523 11k
0
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0
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3.9k
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Comment: C: "Error: --recode 23 cannot be used with multi-character allele names." when conv
6.8 years ago by chrchang523 11k
0
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1
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4.1k
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Answer: A: Plink unable to read plink.dosage.gz file
6.8 years ago by chrchang523 11k
4
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0
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2.9k
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Answer: A: Get all SNPs that are in high linkage disequilibrium (based on D') for a set of
6.8 years ago by chrchang523 11k
3
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2
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8.9k
views
Answer: A: Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inf
6.8 years ago by chrchang523 11k
3
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1
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4.3k
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Answer: A: Parallel in PLINK for linear association for SNP effects
6.8 years ago by chrchang523 11k
1
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0
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1.8k
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Comment: C: PLINK meta-analysis when there is SNP for just one study
6.8 years ago by chrchang523 11k
1
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0
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34k
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Comment: C: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
6.8 years ago by chrchang523 11k
1
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0
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2.5k
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Answer: C: Genome-wide LD PLINK | empty file for chromosome 24
6.8 years ago by chrchang523 11k
1
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0
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6.9k
views
Comment: C: PLINK Error: No valid entries in --score file.
updated 6.9 years ago by 45k • written 7.0 years ago by 11k
2
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1
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6.9k
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Answer: Answer: PLINK Error: No valid entries in --score file.
updated 6.9 years ago by 45k • written 7.0 years ago by 11k
1
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0
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2.7k
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Answer: A: Convert matrix in numeric format to genotype format
6.9 years ago by chrchang523 11k
1
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0
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3.3k
views
Comment: C: How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be re
6.9 years ago by chrchang523 11k
3
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0
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3.3k
views
Answer: A: How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be re
6.9 years ago by chrchang523 11k
0
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0
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8.6k
views
Comment: C: 1000Genomes population allele frequencies for list of SNPs
6.9 years ago by chrchang523 11k
4
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1
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8.6k
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Answer: A: 1000Genomes population allele frequencies for list of SNPs
6.9 years ago by chrchang523 11k
0
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0
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7.0k
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Answer: A: Count variants between two samples within a multi-sample VCF
7.0 years ago by chrchang523 11k
6
votes
0
replies
13k
views
Answer: A: plink produces does pruning according to log file but prune.in is full of dots
updated 7.0 years ago by 12k • written 7.0 years ago by 11k
13
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1
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59k
views
Answer: A: converting vcf file to plink ped/map format while filtering the snps
updated 7.0 years ago by 12k • written 11.1 years ago by 11k
1
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0
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2.2k
views
Answer: A: Find clones in a population using a vcf file.
7.0 years ago by chrchang523 11k
0
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0
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7.3k
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Comment: C: Tool to fix reference allele nucleotide in vcf
7.0 years ago by chrchang523 11k
0
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0
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5.3k
views
Comment: C: Perl/Python script: phased vcf to phased ped
7.0 years ago by chrchang523 11k
0
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2
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5.3k
views
Comment: C: Perl/Python script: phased vcf to phased ped
7.0 years ago by chrchang523 11k
1
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1
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5.3k
views
Comment: C: Perl/Python script: phased vcf to phased ped
7.0 years ago by chrchang523 11k
2
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0
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5.3k
views
Comment: C: Perl/Python script: phased vcf to phased ped
7.0 years ago by chrchang523 11k
5
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2
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5.3k
views
Answer: C: Perl/Python script: phased vcf to phased ped
7.0 years ago by chrchang523 11k
1
vote
0
replies
5.3k
views
Comment: C: Perl/Python script: phased vcf to phased ped
7.0 years ago by chrchang523 11k
2
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1
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5.3k
views
Comment: C: Perl/Python script: phased vcf to phased ped
7.0 years ago by chrchang523 11k
4
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0
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5.0k
views
Answer: A: compare groups/populations - vcf files
7.0 years ago by chrchang523 11k
2
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0
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6.7k
views
Comment: C: Fast way to extract part of genotypes data from 1000 Genome VCF files
7.0 years ago by chrchang523 11k
1
vote
1
reply
6.7k
views
Comment: C: Fast way to extract part of genotypes data from 1000 Genome VCF files
7.0 years ago by chrchang523 11k
914 results • Page 12 of 19
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