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Filtering VCF files based on VAF giving incorrect results
GATK picard VCF bcftools
updated 10 months ago by 166k • written 11 months ago by ▴ 20
0
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1
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833
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Comment: Comment: Allele count of 2 for homoplasmic MT variants in VCF
11 months ago by Arton ▴ 20
2
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4
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833
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Allele count of 2 for homoplasmic MT variants in VCF
Variant-Calling GATK VCF
11 months ago by Arton ▴ 20
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1
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1.0k
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Comment: Comment: Filtering VCF files based on VAF giving incorrect results
11 months ago by Arton ▴ 20
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1
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1.3k
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Comment: Comment: Using VEP annotation output as the input for a second VEP annotation
11 months ago by Arton ▴ 20
1
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0
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2.8k
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Comment: Comment: How to calculate coverage of Nanopore long read data?
11 months ago by Arton ▴ 20
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1
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690
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Comment: Comment: I can't add VAF from population for all of my variants from VCF file
13 months ago by Arton ▴ 20
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0
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322
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Analyzing differentially methylated regions from Nanopore long read data?
Long-read-sequencing methylation
updated 12 months ago by 45k • written 13 months ago by ▴ 20
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643
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Answer: Answer: NanoPlot quality data
13 months ago by Arton ▴ 20
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1
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1.2k
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Comment: Comment: index fasta file for HaplotypeCaller
13 months ago by Arton ▴ 20
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1
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1.2k
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Answer: Answer: index fasta file for HaplotypeCaller
13 months ago by Arton ▴ 20
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0
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808
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Comment: Comment: How to merge VCF files from multiple samples and remove individual level informa
13 months ago by Arton ▴ 20
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0
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808
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Comment: Comment: How to merge VCF files from multiple samples and remove individual level informa
13 months ago by Arton ▴ 20
3
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4
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808
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How to merge VCF files from multiple samples and remove individual level information
VCF
13 months ago by Arton ▴ 20
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1
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2.8k
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Comment: Comment: How to calculate coverage of Nanopore long read data?
14 months ago by Arton ▴ 20
0
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1
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1.3k
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Comment: Comment: Using VEP annotation output as the input for a second VEP annotation
14 months ago by Arton ▴ 20
0
votes
1
reply
1.3k
views
Comment: Comment: Using VEP annotation output as the input for a second VEP annotation
14 months ago by Arton ▴ 20
0
votes
1
reply
1.3k
views
Comment: Comment: Using VEP annotation output as the input for a second VEP annotation
updated 14 months ago by 45k • written 14 months ago by ▴ 20
1
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9
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1.3k
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Using VEP annotation output as the input for a second VEP annotation
Annotation VEP VCF
11 months ago by Arton ▴ 20
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0
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2.8k
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Comment: Comment: How to calculate coverage of Nanopore long read data?
2.3 years ago by Arton ▴ 20
6
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5
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2.8k
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How to calculate coverage of Nanopore long read data?
sequencing coverage
updated 7 months ago by ★ 4.2k • written 2.3 years ago by ▴ 20
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1
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1.2k
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Comment: Comment: NCBI reported coverage from long and short reads
2.3 years ago by Arton ▴ 20
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0
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7.4k
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Comment: Comment: bait interval list for picard collecthsmetrices
2.3 years ago by Arton ▴ 20
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0
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625
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Custom allele frequency file for Merlin
pLINK Merlin Linkage
3.3 years ago by Arton ▴ 20
0
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1
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4.6k
views
Comment: Comment: Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the
3.4 years ago by Arton ▴ 20
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