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1
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Answer: Answer: Mirror Manhattan Plot
4.3 years ago by Jimbou ▴ 960
8
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17k
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Answer: A: Finding overlaps between GRanges objects
5.0 years ago by Jimbou ▴ 960
0
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0
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9.5k
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Answer: A: manhattan plot for different color in R
5.0 years ago by Jimbou ▴ 960
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1
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2.7k
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Comment: C: Plot GWAS p value distribution for multiple traits
5.1 years ago by Jimbou ▴ 960
2
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1
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3.7k
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Answer: A: updating SNP names in VCF file
5.4 years ago by Jimbou ▴ 960
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12k
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Comment: C: Partial or complete overlap of two genomic ranges
5.4 years ago by Jimbou ▴ 960
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1.3k
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Comment: C: Snptest association test results OR and BETA difference
5.5 years ago by Jimbou ▴ 960
3
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1
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3.8k
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Answer: Answer: Gviz (Bioconductor/R) ordering of groups in AnnotationTrack
updated 3.3 years ago by 45k • written 10.0 years ago by ▴ 960
1
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0
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3.5k
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Comment: C: Snpsift to filter a number of genes
5.6 years ago by Jimbou ▴ 960
2
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2
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1.9k
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SnpSift Annotate replace ID column
snps snpsift snpeff annotation
updated 5.7 years ago by ▴ 70 • written 5.7 years ago by ▴ 960
0
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1.5k
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Comment: C: how to find haplotype of SNPs
5.7 years ago by Jimbou ▴ 960
1
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1
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2.3k
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Comment: C: CYP2D6 alleles determination
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 960
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2
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2.7k
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Answer: C: plink remove snps with marker
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 960
1
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1
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3.9k
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Answer: C: How can identify the driver genes with germline mutations ?
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 960
0
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0
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2.9k
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Comment: C: Calculate correlation for each rows?
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 960
1
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0
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2.0k
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Answer: A: Extracting sequences from frequency matrix
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 960
4
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0
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4.6k
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Answer: A: Ideogram in Gviz without a valid UCSC genome
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 960
8
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0
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44k
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Answer: A: Aggregate multiple rows based on common values in given columns in R
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 960
2
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1
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11k
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Answer: Answer: Coding genotypes from nucleotides to 0/1/2 in R.
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 960
0
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1
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23k
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Comment: C: Pathway Enrichment Analysis, Clustering and Scoring with pathfindR
6.1 years ago by Jimbou ▴ 960
0
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0
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3.5k
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Comment: C: Read File Format .Bam
updated 6.1 years ago by 45k • written 11.6 years ago by ▴ 960
8
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1
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8.3k
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Answer: A: Annotate genomic positions with dbSNP rsIds
6.5 years ago by Jimbou ▴ 960
0
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0
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8.3k
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Comment: C: Annotate genomic positions with dbSNP rsIds
6.5 years ago by Jimbou ▴ 960
10
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5
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8.3k
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Annotate genomic positions with dbSNP rsIds
dbSNP bed
updated 2.4 years ago by 45k • written 6.5 years ago by ▴ 960
2
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0
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2.7k
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Comment: C: R programming: match and rearrange
updated 7.1 years ago by 45k • written 10.5 years ago by ▴ 960
0
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0
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1.9k
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Difference of CN probes and SNP probes on genotyping microchip arrays
Affymetrix SNP CNV array
updated 8.3 years ago by 20 • written 8.3 years ago by ▴ 960
0
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0
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3.1k
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Comment: C: Loading IMPUTE2 output into R for eQTL analysis
9.4 years ago by Jimbou ▴ 960
1
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0
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4.9k
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Comment: C: I cannot read data into R (read.affy)
9.5 years ago by Jimbou ▴ 960
0
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0
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2.2k
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Comment: C: PLINK and 1000 Genome browser
9.5 years ago by Jimbou ▴ 960
1
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0
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4.0k
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Comment: C: CNV analysis for targeted genomic region
9.6 years ago by Jimbou ▴ 960
0
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1
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4.0k
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Comment: C: CNV analysis for targeted genomic region
9.6 years ago by Jimbou ▴ 960
0
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0
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2.7k
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Answer: A: Imputation for genotyping data
9.6 years ago by Jimbou ▴ 960
0
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1
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2.3k
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Comment: C: What is the best method for determining copy number of a specific gene (from sal
9.7 years ago by Jimbou ▴ 960
0
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0
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2.5k
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Comment: C: Good way of plotting a statistic with error bars
9.8 years ago by Jimbou ▴ 960
0
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0
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2.3k
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Comment: C: CYP2D6 alleles determination
9.8 years ago by Jimbou ▴ 960
0
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2
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2.9k
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Comment: C: Calculate correlation for each rows?
9.9 years ago by Jimbou ▴ 960
8
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5
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12k
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Genome Coordinates Between Assemblies: Liftover A Snp Array
snp liftover assembly array hg19
10.0 years ago by Jimbou ▴ 960
2
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0
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4.2k
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Answer: Answer: Impute2 dosage file into standard Plink files
updated 3.1 years ago by 45k • written 10.1 years ago by ▴ 960
1
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0
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3.0k
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Comment: Comment: How to just use 1000 genomes phase 3 CHB+JPT+CHS data as reference to impute?
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 960
0
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0
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2.9k
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Comment: Comment: Principal component analysis
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 960
2
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0
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7.9k
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Comment: C: How to visualize a list of genes on their chromosomal position?
10.4 years ago by Jimbou ▴ 960
0
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1
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2.3k
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Comment: Comment: Is it possible to create a plink format file from these illumina data?
updated 3.1 years ago by 45k • written 10.4 years ago by ▴ 960
0
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0
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2.5k
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Comment: Comment: Comparison of sequence homolgy of two genes
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 960
1
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3
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2.5k
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Comparison of sequence homolgy of two genes
Webtool sequence homology
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 960
4
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1
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5.0k
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Answer: Answer: R programming: genotype concordance
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 960
0
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1
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5.0k
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Comment: C: R programming: genotype concordance
10.5 years ago by Jimbou ▴ 960
17
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7
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12k
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Partial or complete overlap of two genomic ranges
GRange sequence R
updated 3.5 years ago by 45k • written 11.5 years ago by ▴ 960
14
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2
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18k
views
TCGA Segement Mean, GISTIC and CNVs
TCGA CNV Affy GISTIC2
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 960
0
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1
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4.0k
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Comment: C: 1000 Genome genotypes for list of snps
10.6 years ago by Jimbou ▴ 960
0
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0
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3.2k
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Comment: Comment: Making Regional Association Plots with the gap package for R
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 960
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