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Comment: Comment: getting RPKM and VST using DEseq2 package
7 months ago by andrew.j.skelton73 6.5k
2
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1
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865
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Answer: Answer: Batch effect correction to compare differentially expressed genes across dataset
11 months ago by andrew.j.skelton73 6.5k
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460
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Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
12 months ago by andrew.j.skelton73 6.5k
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1
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460
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Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
12 months ago by andrew.j.skelton73 6.5k
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2
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2.5k
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Answer: Answer: EnhancedVolcano and scRNAseq differential gene expression
12 months ago by andrew.j.skelton73 6.5k
1
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0
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961
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Answer: Answer: How to find differences between single cell RNA seq samples beyond cluster infor
18 months ago by andrew.j.skelton73 6.5k
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1
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1.2k
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Comment: Comment: Transcripts mapping using Salmon
18 months ago by andrew.j.skelton73 6.5k
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1
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1.2k
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Comment: Comment: Transcripts mapping using Salmon
18 months ago by andrew.j.skelton73 6.5k
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1
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2.0k
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Answer: Answer: Merge STAR Log.final.out files together
22 months ago by andrew.j.skelton73 6.5k
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1
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1.7k
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Comment: C: Command not found after pip install spliceai
2.4 years ago by andrew.j.skelton73 6.5k
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0
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5.2k
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Comment: C: Time Course RNA-Seq
2.6 years ago by andrew.j.skelton73 6.5k
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1.0k
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Comment: C: Keep the paired reads whose length less than 400,000 bp
2.9 years ago by andrew.j.skelton73 6.5k
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1
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1.9k
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Comment: C: Student's t-test (For Paired samples) calculation
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
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0
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3.0k
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Comment: C: RNA-seq dedupe PCR contamination before or after mapping
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
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0
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1.9k
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Answer: A: Query regarding transcriptome analysis
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
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0
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4.4k
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Answer: A: Cufflinks bias correction and DESEq2
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
3
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1
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8.4k
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Comment: C: Bimodal GC content
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
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0
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2.4k
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Comment: C: Help needed with selecting top DE genes, Microarray data analysed with "limma"
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
2
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1
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2.4k
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Answer: A: Help needed with selecting top DE genes, Microarray data analysed with "limma"
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
0
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0
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1.3k
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Comment: C: What tool to choose to compare 350 VCF files from the whole genome data processi
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
2
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1
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1.6k
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Answer: A: I want to find differentially expressed miRNAs between 4 groups
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
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0
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2.5k
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Answer: A: house keeping genes for RNA-seq
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
1
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1
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1.5k
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Answer: A: getting differential expressed genes between tissues, species and time series
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
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0
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3.7k
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Answer: A: Run R in multi threaded
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
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2
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4.2k
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Comment: C: alignment rate in bowtie2
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
1
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1
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4.2k
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Comment: C: alignment rate in bowtie2
updated 3.2 years ago by 38k • written 7.1 years ago by 6.5k
2
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1
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1.5k
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Answer: A: Joining RNASeq librairies from different experiments
updated 3.2 years ago by 38k • written 7.2 years ago by 6.5k
0
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1
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3.0k
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Answer: A: cross platform microarray normalization
updated 3.2 years ago by 38k • written 7.2 years ago by 6.5k
1
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0
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2.9k
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Answer: A: Software to determine whether genes are related to cancer
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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0
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14k
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Answer: A: Displaying Bed file in IGV
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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1
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3.9k
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Comment: C: Determine differential expression for microarray data; sample size = 2 + many te
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
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1
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3.8k
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Answer: A: How to visualize a large number of GO terms in directed acyclic graphs
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
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1
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3.1k
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Comment: C: Illumina Microarray Annotation
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
2
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1
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5.7k
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Answer: A: After run Cufflinks - cuffdiff there is no information about isoforms, TSS, CDS.
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
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0
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3.5k
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Comment: C: Statistical tests for sanity check of expression data before inferring network
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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1
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5.7k
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Comment: C: After run Cufflinks - cuffdiff there is no information about isoforms, TSS, CDS.
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
1
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1
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3.5k
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Comment: C: Statistical tests for sanity check of expression data before inferring network
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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0
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3.0k
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Comment: C: Using ensembl genomes and gtf conversion
updated 3.2 years ago by 38k • written 7.2 years ago by 6.5k
0
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1
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3.0k
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Answer: A: Using ensembl genomes and gtf conversion
updated 3.2 years ago by 38k • written 7.2 years ago by 6.5k
1
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1
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2.0k
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Answer: A: CLC workbench- subtractive genomics
updated 3.2 years ago by 38k • written 7.2 years ago by 6.5k
0
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1
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2.6k
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Answer: A: Facing error while trying to build SNP recalibration model using GATK
updated 3.2 years ago by 38k • written 7.2 years ago by 6.5k
1
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1
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3.5k
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Comment: C: Statistical tests for sanity check of expression data before inferring network
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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0
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3.5k
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Answer: A: Statistical tests for sanity check of expression data before inferring network
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
1
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0
replies
8.2k
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Answer: A: How To Merge Two Microarrays Datasets?
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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1
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8.7k
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Answer: A: Extracting multiple sequences by ID from a FASTA file
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
2
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0
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7.0k
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Answer: A: Chrom Sizes for Ensembl Reference
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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0
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7.0k
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Comment: C: Chrom Sizes for Ensembl Reference
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
0
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1
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7.0k
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Comment: C: Chrom Sizes for Ensembl Reference
updated 3.2 years ago by 38k • written 8.9 years ago by 6.5k
1
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1
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3.4k
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Answer: A: conditional loop does not work for plotting in R !!
updated 3.3 years ago by 38k • written 7.2 years ago by 6.5k
0
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1
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2.3k
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Comment: C: Ilumina Genome Studio: How to extract control_probe_profile?
updated 3.3 years ago by 38k • written 7.2 years ago by 6.5k
700 results • Page 1 of 14
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