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2
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3
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317
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Using GPUs in snakemake
Parabricks gpu snakemake slurm
23 days ago by raphael.B ▴ 520
1
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0
replies
317
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Answer: Answer: Using GPUs in snakemake
23 days ago by raphael.B ▴ 520
1
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2
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707
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Comment: Comment: RNA-seq pipeline
3 months ago by raphael.B ▴ 520
2
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1
reply
895
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Answer: Answer: Individual vs. joint call VCFs
4 months ago by raphael.B ▴ 520
0
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1
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461
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Comment: Comment: bcftools=1.18 not filtering correcting MAF
4 months ago by raphael.B ▴ 520
0
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1
reply
702
views
Answer: Answer: Ann.vcf format
7 months ago by raphael.B ▴ 520
1
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0
replies
585
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Answer: Answer: functional and genome annotation analysis
7 months ago by raphael.B ▴ 520
0
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0
replies
544
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Answer: Answer: BCFtools isec output vs BCFtools query
updated 7 months ago by 43k • written 7 months ago by ▴ 520
2
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0
replies
487
views
Answer: Answer: Association Study
8 months ago by raphael.B ▴ 520
1
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0
replies
4.2k
views
Answer: Answer: RVtests CMC output column definitions
8 months ago by raphael.B ▴ 520
0
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0
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952
views
Answer: Answer: matching gnomAD allele frequency
9 months ago by raphael.B ▴ 520
0
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1
reply
1.7k
views
Answer: Answer: GATK memory error with Java
9 months ago by raphael.B ▴ 520
2
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0
replies
1.2k
views
Answer: Answer: Convert files made for b38 into hg19 human reference?
9 months ago by raphael.B ▴ 520
0
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0
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1.7k
views
Comment: Comment: Problem with mamba/conda env create
9 months ago by raphael.B ▴ 520
1
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2
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1.7k
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Comment: Comment: Problem with mamba/conda install
9 months ago by raphael.B ▴ 520
1
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0
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707
views
Comment: Comment: Hwo to identify that BQSR is performed on CRAM file
9 months ago by raphael.B ▴ 520
1
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1
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707
views
Answer: Answer: Hwo to identify that BQSR is performed on CRAM file
9 months ago by raphael.B ▴ 520
0
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0
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627
views
Comment: Comment: rust_htslib unrecognized filter ID
10 months ago by raphael.B ▴ 520
2
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2
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627
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rust_htslib unrecognized filter ID
htslib rust SNP filtering
10 months ago by raphael.B ▴ 520
0
votes
0
replies
702
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Comment: Comment: Processing WES VCF for case control GWAS analysis
11 months ago by raphael.B ▴ 520
0
votes
2
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919
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Answer: Answer: bcftools "--filter-logic" flag, what + means?
11 months ago by raphael.B ▴ 520
1
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2
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739
views
Answer: Answer: how to call variants in haploid genome
11 months ago by raphael.B ▴ 520
0
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0
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957
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Comment: Comment: vcftools on 2 snpeff vcf files
12 months ago by raphael.B ▴ 520
0
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1
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957
views
Comment: Comment: vcftools on 2 snpeff vcf files
12 months ago by raphael.B ▴ 520
2
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1
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957
views
Answer: Answer: vcftools on 2 snpeff vcf files
12 months ago by raphael.B ▴ 520
1
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1
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976
views
Comment: Comment: Any tutorial how to "link" SNPs with genes?
12 months ago by raphael.B ▴ 520
0
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1
reply
2.3k
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Comment: Comment: Snakemake doesn't recognize output files even though they are created
12 months ago by raphael.B ▴ 520
0
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1
reply
2.3k
views
Comment: Comment: Snakemake doesn't recognize output files even though they are created
13 months ago by raphael.B ▴ 520
2
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0
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1.0k
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Comment: Comment: error with CombineGVCFs to join large number of files
13 months ago by raphael.B ▴ 520
2
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0
replies
854
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Answer: Answer: multiallelic variants
13 months ago by raphael.B ▴ 520
1
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1
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1.6k
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Comment: Comment: GATK GenotypeGVCFs explain
13 months ago by raphael.B ▴ 520
2
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0
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582
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Answer: Answer: Snakemake error to build synteny from BUSCO .tsv
13 months ago by raphael.B ▴ 520
0
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0
replies
678
views
Comment: Comment: filter VCF based on FORMAT
13 months ago by raphael.B ▴ 520
2
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0
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676
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Answer: Answer: bcftools merge without multiallelic sites
13 months ago by raphael.B ▴ 520
3
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0
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531
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Answer: Answer: use fastQC to get one summary report for all the multiple .gz files
14 months ago by raphael.B ▴ 520
1
vote
0
replies
1.5k
views
Answer: Answer: Merge several input files to single output file snakemake
14 months ago by raphael.B ▴ 520
0
votes
1
reply
1.7k
views
Comment: Comment: GATK4.3 ApplyBQSR
14 months ago by raphael.B ▴ 520
0
votes
1
reply
1.0k
views
Comment: Comment: AF=NA in gnomad vcf
updated 16 months ago by 43k • written 16 months ago by ▴ 520
1
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1
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1.0k
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Answer: Answer: AF=NA in gnomad vcf
updated 16 months ago by 43k • written 16 months ago by ▴ 520
1
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0
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814
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Answer: Answer: STAR Aligment
17 months ago by raphael.B ▴ 520
0
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0
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814
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Comment: Comment: STAR Aligment
17 months ago by raphael.B ▴ 520
0
votes
0
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2.1k
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Answer: Answer: Count missing and non missing values in a VCF file
18 months ago by raphael.B ▴ 520
1
vote
0
replies
825
views
Comment: Comment: Representation of variables in PCA
19 months ago by raphael.B ▴ 520
1
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1
reply
875
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Answer: Answer: bcftools merge doesn't recalculate AF
19 months ago by raphael.B ▴ 520
0
votes
0
replies
861
views
Answer: Answer: How to check the quality of VCF file for GWAS analysis
20 months ago by raphael.B ▴ 520
1
vote
1
reply
705
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Answer: Answer: Count all variants from vcf file
20 months ago by raphael.B ▴ 520
1
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0
replies
748
views
Answer: Answer: BEDtools merge output
20 months ago by raphael.B ▴ 520
0
votes
1
reply
868
views
Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
21 months ago by raphael.B ▴ 520
0
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0
replies
1.2k
views
Comment: Comment: Writing a function in R which will identify peaks within a data frame
21 months ago by raphael.B ▴ 520
3
votes
1
reply
924
views
Comment: Comment: A question about BED file and finding mutation in vcf file
21 months ago by raphael.B ▴ 520
77 results • Page 1 of 2
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