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0
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4.1k
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Comment: C: Salmon error message
4.6 years ago by Rob 6.7k
6
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9
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5.7k
views
Keeping paired reads together when sorting BAM file by name
alignment next-gen RNA-Seq
updated 2.2 years ago by 44k • written 9.4 years ago by 6.7k
0
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0
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17k
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Comment: C: Fragment Size: TLEN vs. isize
updated 4.7 years ago by 44k • written 9.9 years ago by 6.7k
17
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1
reply
32k
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Answer: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
updated 4.7 years ago by 143k • written 4.7 years ago by 6.7k
3
votes
0
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722
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News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 12 months ago by 44k • written 4.8 years ago by 6.7k
0
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0
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5.7k
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Comment: C: Python Program to read .fasta file to .txt file
4.8 years ago by Rob 6.7k
2
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1
reply
3.2k
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Comment: C: Merging the output of salmon for RNA-seq counting with paired-end and single-end
4.8 years ago by Rob 6.7k
0
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1
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1.2k
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Comment: C: inconsistent results of rsem quantification
4.8 years ago by Rob 6.7k
2
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0
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1.3k
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Answer: A: Does salmon use phred scores while pseudoaligning (and/or validating mapping)?
5.1 years ago by Rob 6.7k
1
vote
1
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1.9k
views
Answer: C: do paired end reads both mapped to the same gene appear consecutive to each othe
5.2 years ago by Rob 6.7k
6
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0
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5.1k
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Answer: C: Salmon (quant.sf) to txtimport
5.2 years ago by Rob 6.7k
0
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1
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5.9k
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Comment: C: Understanding salmon codes
5.3 years ago by Rob 6.7k
0
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1
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5.9k
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Comment: C: Understanding salmon codes
5.3 years ago by Rob 6.7k
1
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1
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5.9k
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Comment: C: Understanding salmon codes
5.3 years ago by Rob 6.7k
1
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1
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5.9k
views
Comment: C: Understanding salmon codes
5.3 years ago by Rob 6.7k
2
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1
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5.9k
views
Comment: C: Understanding salmon codes
5.3 years ago by Rob 6.7k
3
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1
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5.9k
views
Answer: C: Understanding salmon codes
5.3 years ago by Rob 6.7k
0
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1
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7.6k
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Comment: C: Salmon transcriptome generation
5.3 years ago by Rob 6.7k
7
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3
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7.6k
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Answer: A: Salmon transcriptome generation
5.3 years ago by Rob 6.7k
0
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0
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4.5k
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Comment: C: Salmon Counts differ in Alignment and Quasi-Mapping mode
5.3 years ago by Rob 6.7k
5
votes
2
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4.5k
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Answer: A: Salmon Counts differ in Alignment and Quasi-Mapping mode
5.3 years ago by Rob 6.7k
2
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1
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6.8k
views
Comment: C: How to change cellranger multimapping algorithm
5.4 years ago by Rob 6.7k
3
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0
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2.9k
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Answer: C: RNA-Seq:How to know RNA-seq data is Strand-Specific or not based on only fastq
updated 5.4 years ago by 83k • written 5.4 years ago by 6.7k
5
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2
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6.8k
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Answer: A: How to change cellranger multimapping algorithm
5.4 years ago by Rob 6.7k
4
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2
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2.5k
views
Answer: A: Average Insert Size When Using Transcript Quantification Tools Such as Salmon?
5.6 years ago by Rob 6.7k
1
vote
2
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3.7k
views
Comment: C: best pipeline to get gene and transcript counts
5.6 years ago by Rob 6.7k
1
vote
1
reply
3.7k
views
Comment: C: best pipeline to get gene and transcript counts
5.6 years ago by Rob 6.7k
1
vote
1
reply
3.7k
views
Comment: C: best pipeline to get gene and transcript counts
5.7 years ago by Rob 6.7k
0
votes
2
replies
3.7k
views
Comment: C: best pipeline to get gene and transcript counts
5.7 years ago by Rob 6.7k
0
votes
1
reply
3.7k
views
Comment: C: best pipeline to get gene and transcript counts
5.7 years ago by Rob 6.7k
1
vote
1
reply
4.5k
views
Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
5.7 years ago by Rob 6.7k
1
vote
2
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4.5k
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Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
5.7 years ago by Rob 6.7k
1
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1
reply
4.5k
views
Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
5.7 years ago by Rob 6.7k
1
vote
1
reply
4.5k
views
Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
5.7 years ago by Rob 6.7k
0
votes
1
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4.5k
views
Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
5.7 years ago by Rob 6.7k
1
vote
1
reply
2.6k
views
Comment: C: Interpretation of Salmon quat.sf result
5.7 years ago by Rob 6.7k
6
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0
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3.7k
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Answer: A: RNA-seq: differentially expressed genes without genome reference
updated 5.7 years ago by 44k • written 8.3 years ago by 6.7k
0
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1
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5.5k
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Comment: C: Poor correlation of read count values from STAR and Kallisto
updated 5.7 years ago by 44k • written 8.3 years ago by 6.7k
0
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1
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3.9k
views
Comment: C: Maximum size limit for indexing genome with bowtie2 with large index option
5.8 years ago by Rob 6.7k
0
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1
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3.9k
views
Comment: C: Maximum size limit for indexing genome with bowtie2 with large index option
5.8 years ago by Rob 6.7k
4
votes
1
reply
1.6k
views
Answer: A: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
5.8 years ago by Rob 6.7k
1
vote
0
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4.3k
views
Comment: C: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
5.8 years ago by Rob 6.7k
4
votes
1
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4.3k
views
Answer: A: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
5.8 years ago by Rob 6.7k
0
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0
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4.3k
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Comment: C: Salmon quantification vs HTSeq count quantification
5.8 years ago by Rob 6.7k
5
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1
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4.3k
views
Answer: A: Salmon quantification vs HTSeq count quantification
5.8 years ago by Rob 6.7k
0
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0
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1.3k
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Comment: C: Salmon Algorithm Binary Search
5.8 years ago by Rob 6.7k
3
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1
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1.3k
views
Answer: A: Salmon Algorithm Binary Search
5.8 years ago by Rob 6.7k
2
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1
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3.1k
views
Comment: C: Stranded RNA-seq data visualization in UCSC
5.8 years ago by Rob 6.7k
3
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1
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3.1k
views
Answer: A: Stranded RNA-seq data visualization in UCSC
5.8 years ago by Rob 6.7k
0
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0
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1.6k
views
Comment: C: Conflict of abundances on different taxonomic levels using centrifuge
5.9 years ago by Rob 6.7k
350 results • Page 4 of 7
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