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How to deal with undetected probes in microarray data?
meta-analysis microarray R
updated 8.1 years ago by 27k • written 8.1 years ago by ▴ 620
1
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0
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3.7k
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Comment: C: Low DE genes in DESeq2 (update PCA plots)
8.1 years ago by Kristin Muench ▴ 620
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0
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1.6k
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I have a list of ABI microarray probes with "signal values". How can I tell if it's been background corrected?
microarray ABI background correction GEO
8.1 years ago by Kristin Muench ▴ 620
3
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1
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3.7k
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Answer: A: Low DE genes in DESeq2
8.1 years ago by Kristin Muench ▴ 620
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1
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2.6k
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Comment: C: Is it problematic to use ANOVA in microarray meta-analysis?
8.2 years ago by Kristin Muench ▴ 620
1
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3
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2.6k
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Is it problematic to use ANOVA in microarray meta-analysis?
microarray stats ANOVA
updated 8.2 years ago by 104k • written 8.2 years ago by ▴ 620
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0
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1.5k
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Comparing gene expression across microarrays
microarray
8.2 years ago by Kristin Muench ▴ 620
7
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2
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5.6k
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List of Ensembl Transcript IDs corresponding to protein-coding genes
RNA-Seq PCA ensembl
updated 8.4 years ago by 7.6k • written 8.4 years ago by ▴ 620
2
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12
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2.4k
views
Nothing will align with HTSeq?
RNA-Seq htseq
updated 21 months ago by 44k • written 8.8 years ago by ▴ 620
0
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1
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8.3k
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Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
8.7 years ago by Kristin Muench ▴ 620
3
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4
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12k
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Bowtie2: Why won't it recognize my index files?
bowtie2
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
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2
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3.0k
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Comment: C: Which .gtf file should I use when aligning/counting total RNA?
8.7 years ago by Kristin Muench ▴ 620
0
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4
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3.0k
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Which .gtf file should I use when aligning/counting total RNA?
RNA-Seq
updated 21 months ago by 44k • written 8.7 years ago by ▴ 620
0
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1
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2.4k
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Comment: C: Nothing will align with HTSeq?
8.7 years ago by Kristin Muench ▴ 620
2
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4
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4.2k
views
Extracting counts from RNA-Seq: trouble with bedtools + multicov
bedtools RNA-Seq multicov
updated 21 months ago by 44k • written 8.8 years ago by ▴ 620
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4.2k
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Comment: C: Extracting counts from RNA-Seq: trouble with bedtools + multicov
8.8 years ago by Kristin Muench ▴ 620
0
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1
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2.6k
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Comment: C: How many unique human Entrez and HUGO gene IDs are there? What number to use for
9.0 years ago by Kristin Muench ▴ 620
1
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3
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2.6k
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How many unique human Entrez and HUGO gene IDs are there? What number to use for Fisher's exact test?
entrez R hugo
updated 18 months ago by 44k • written 9.0 years ago by ▴ 620
0
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0
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3.6k
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How to make lumi accept .txt data?
microarray lumi
updated 17 months ago by 44k • written 9.0 years ago by ▴ 620
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0
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4.8k
views
Comment: Comment: Determining gene expression with 2 biological replicates and RPKM data only
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
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0
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4.8k
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Comment: Comment: Determining gene expression with 2 biological replicates and RPKM data only
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
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0
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2.7k
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Comment: C: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
9.4 years ago by Kristin Muench ▴ 620
0
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0
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2.7k
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Comment: C: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
9.4 years ago by Kristin Muench ▴ 620
0
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0
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2.7k
views
Comment: C: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
9.4 years ago by Kristin Muench ▴ 620
0
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1
reply
4.8k
views
Comment: Comment: Determining gene expression with 2 biological replicates and RPKM data only
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
3
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5
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4.8k
views
Determining gene expression with 2 biological replicates and RPKM data only
RPKM RNA-Seq
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
0
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0
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12k
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Comment: C: Bowtie2: Why won't it recognize my index files?
9.4 years ago by Kristin Muench ▴ 620
0
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1
reply
4.2k
views
Comment: Comment: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
0
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1
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4.2k
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Comment: Comment: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
3
votes
4
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4.2k
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I have demultiplexed files for a single biological replicate. When to combine them in pipeline?
FastQC RNA-Seq
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 620
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