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8.1k
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Comment: C: How to choose Trimmomatic's parameter 'MINLEN '?
7.0 years ago by Ian 6.0k
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0
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3.3k
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Answer: A: Differential chip-seq peak calling using macs2
7.0 years ago by Ian 6.0k
4
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1
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8.1k
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Answer: A: How to choose Trimmomatic's parameter 'MINLEN '?
7.0 years ago by Ian 6.0k
2
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0
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3.0k
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Answer: A: ChIP-seq Input replicate correlation
7.1 years ago by Ian 6.0k
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0
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4.3k
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Comment: C: Peak calling for broad histone-modification regions
7.1 years ago by Ian 6.0k
2
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1
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6.3k
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Answer: A: Filter MACS peaks by enrichment/FDR?
7.1 years ago by Ian 6.0k
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1
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3.8k
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Comment: C: prepare pair-ended reads for peak calling
7.2 years ago by Ian 6.0k
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1
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3.8k
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Comment: C: prepare pair-ended reads for peak calling
7.2 years ago by Ian 6.0k
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1
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30k
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Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
7.3 years ago by Ian 6.0k
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1
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2.6k
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Comment: C: How to extend variable length intervals to the same final length?
7.3 years ago by Ian 6.0k
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0
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2.6k
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Comment: C: How to extend variable length intervals to the same final length?
7.3 years ago by Ian 6.0k
5
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6
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2.6k
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How to extend variable length intervals to the same final length?
bedtools slop intervals footprint
updated 7.3 years ago by 35k • written 7.3 years ago by 6.0k
1
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1
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1.9k
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Answer: A: ChIP on chip array cover genome or promoter regions?
7.3 years ago by Ian 6.0k
3
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1
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7.5k
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Answer: A: Paired end and single end with MACS2
7.4 years ago by Ian 6.0k
0
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1
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1.9k
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Comment: C: ChIP on chip array cover genome or promoter regions?
7.4 years ago by Ian 6.0k
15
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1
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242k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
7.4 years ago by Ian 6.0k
0
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0
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1.2k
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Answer: A: Chip Seq controls
7.5 years ago by Ian 6.0k
1
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1
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2.2k
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Answer: A: How analyse chip-exo paired read data and get BigWig or Peaks called?
7.6 years ago by Ian 6.0k
0
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1
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5.1k
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Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
7.6 years ago by Ian 6.0k
0
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2
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4.3k
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Comment: C: call differential peaks H3K27ac
7.6 years ago by Ian 6.0k
2
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1
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4.3k
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Answer: A: call differential peaks H3K27ac
7.6 years ago by Ian 6.0k
1
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0
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5.3k
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Answer: A: Tag size in MACS and MACS2
7.7 years ago by Ian 6.0k
1
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0
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4.8k
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Comment: C: Trim adapter sequence for single-end
7.8 years ago by Ian 6.0k
6
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3
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8.8k
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Tool: Masc - A Tool For Calculating Mean Fragment Size For Chip-Seq Peak Calling Analysis
chip-seq
updated 11 months ago by 44k • written 11.3 years ago by 6.0k
0
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0
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1.5k
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Answer: A: TFBS finding in whole genome
7.9 years ago by Ian 6.0k
5
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0
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32k
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Answer: A: Is Paired End analysis possible with FASTQC?
8.1 years ago by Ian 6.0k
0
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1
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2.9k
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Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.1 years ago by Ian 6.0k
0
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0
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2.9k
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Comment: C: Problem viewing a bigWig file on UCSC browser - any debugging solutions?
8.1 years ago by Ian 6.0k
3
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5
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2.9k
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Problem viewing a bigWig file on UCSC browser - any debugging solutions?
ucsc bigwig
8.1 years ago by Ian 6.0k
1
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0
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6.6k
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Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.2 years ago by Ian 6.0k
0
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0
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5.7k
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Comment: C: Do I need to remove adapter if FastQC showed no adapter content.
8.2 years ago by Ian 6.0k
1
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1
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51k
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Answer: A: Visualization of ChIP-seq data using Heatmaps
8.3 years ago by Ian 6.0k
3
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3
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65k
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Answer: A: How To Convert Gencode Gtf Into Bed Format ?
updated 8.3 years ago by 35k • written 11.6 years ago by 6.0k
0
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0
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3.8k
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Comment: C: 'effective genome size' , how precisse does it have to be?
8.3 years ago by Ian 6.0k
0
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0
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2.2k
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Answer: Answer: Does sequencing depth affect MACS2 q-values?
updated 23 months ago by 44k • written 8.3 years ago by 6.0k
1
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1
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6.6k
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Comment: C: Chip-Seq Peak hight difference between BED and BW file formats.
8.4 years ago by Ian 6.0k
0
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0
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7.8k
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Comment: C: Doubts related to MACS tool
8.4 years ago by Ian 6.0k
0
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1
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3.8k
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Answer: A: Peak calling with MACS for DNase-seq data and Peak annotation by Homer
8.5 years ago by Ian 6.0k
1
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1
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7.5k
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Comment: C: Possible augmented reality tools for bioinformatics and current problems
8.6 years ago by Ian 6.0k
0
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1
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2.0k
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Answer: A: How to test for enrichment of three bed files that 'may' form a complex
8.6 years ago by Ian 6.0k
0
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0
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3.8k
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Answer: A: Filtering fastq (by quality score and length), optimum criteria?
8.6 years ago by Ian 6.0k
0
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1
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6.9k
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Answer: Answer: Bowtie2 or RSEM (with Bowtie2) alignment of PE reads with reference transcriptom
updated 21 months ago by 44k • written 8.7 years ago by 6.0k
3
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0
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3.2k
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Answer: Answer: The way to compare ChIPSeq peaks enrichment level in different samples
updated 21 months ago by 44k • written 8.7 years ago by 6.0k
0
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1
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2.5k
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Answer: Answer: mfold parameter in MACS on Galaxy/ Galaxy Cistrome
updated 21 months ago by 44k • written 8.7 years ago by 6.0k
0
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1
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3.7k
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Comment: Comment: How to remove kmer profiles?
updated 21 months ago by 44k • written 8.7 years ago by 6.0k
26
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17
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7.9k
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8 follow
Tutorial: virtualenv - running Python based software in isolation
python virtualenv
updated 21 months ago by 44k • written 9.8 years ago by 6.0k
7
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3
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2.6k
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Differential methylation analysis: sequencing biological replicates versus pooled samples?
dma differential-methylation
updated 21 months ago by 44k • written 8.8 years ago by 6.0k
0
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1
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3.2k
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Comment: Comment: Best to overlap hundreds of BED files to one master BED file?
updated 20 months ago by 44k • written 8.9 years ago by 6.0k
0
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2
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3.2k
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Comment: Comment: Best to overlap hundreds of BED files to one master BED file?
updated 20 months ago by 44k • written 8.9 years ago by 6.0k
7
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6
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3.2k
views
Best to overlap hundreds of BED files to one master BED file?
bed overlap intersect
updated 20 months ago by 44k • written 8.9 years ago by 6.0k
455 results • Page 3 of 10
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