I've been looking to download human signaling pathways & gene set database. I see that pantherdb.org offers such dataset for download, and I am able to extract signaling pathways and their associated genes, and save them in my local database. However, I noticed that the gene symbols may not the same as Hugo, and have no entrez id.
I also checked pathway commons website and they do offer a lot of public databases for download, but I found they made the extraction more complicated, because most of the downloadable files are in biopax or other xml formats. I am wondering where I can find a flat text file that has human pathways and genes.