Question: binary phenotype or discrete traits in wgcna analysis
3
gravatar for l0o0
4.9 years ago by
l0o0170
China
l0o0170 wrote:

In WGCNA R package how do you correlate identified co-expression modules with binary phenotype data ? All the papers and tutorial material I have seen works with quantitative data. Does psuedo numbering traits ( 1 for control and 2 for disease sample) make any sense or are there any other options ? 

In another case, i have different tissue, the information all i have is that these samples are from different tissue. How do i apply these data to WGCNA?

 

 

wgcna rna-seq co-expression R • 2.3k views
ADD COMMENTlink modified 2.1 years ago by Biostar ♦♦ 20 • written 4.9 years ago by l0o0170

Any luck or progress on this?

ADD REPLYlink written 24 months ago by O.rka90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1866 users visited in the last hour