Question: binary phenotype or discrete traits in wgcna analysis
gravatar for l0o0
6.1 years ago by
l0o0200 wrote:

In WGCNA R package how do you correlate identified co-expression modules with binary phenotype data ? All the papers and tutorial material I have seen works with quantitative data. Does psuedo numbering traits ( 1 for control and 2 for disease sample) make any sense or are there any other options ? 

In another case, i have different tissue, the information all i have is that these samples are from different tissue. How do i apply these data to WGCNA?



wgcna rna-seq co-expression R • 2.8k views
ADD COMMENTlink modified 3.3 years ago by Biostar ♦♦ 20 • written 6.1 years ago by l0o0200

Any luck or progress on this?

ADD REPLYlink written 3.3 years ago by O.rka190
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