Question: Installing SNPRelate package with R at Ubuntu machine
0
gravatar for always_learning
4.8 years ago by
Doha, Qatar
always_learning960 wrote:

Hi All,

I am planning to install SNPRelate  package with R on Ubuntu Machine. I tried to procedure mentioned at http://corearray.sourceforge.net/ but while installing I am getting following warnings 

> install.packages("gdsfmt", repos="http://R-Forge.R-project.org")
Installing package into ‘/home/syed/R/x86_64-pc-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
Warning message:
package ‘gdsfmt’ is not available (for R version 3.1.0) 
>  install.packages("SNPRelate", repos="http://R-Forge.R-project.org")
Installing package into ‘/home/syed/R/x86_64-pc-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
Warning message:
package ‘SNPRelate’ is not available (for R version 3.1.0) 

I tried to install latest R version already. 

Can some one help me with workaround for this ? What version of R this SNPRelate supports ? 

 

pca R software error • 3.2k views
ADD COMMENTlink modified 4.8 years ago • written 4.8 years ago by always_learning960
1

Those were removed from CRAN a couple weeks ago. You can still download the versions from the archive (gdsfmt, SNPRelate) and try to install them manually.

ADD REPLYlink written 4.8 years ago by Devon Ryan88k

Thanks !! Any one can help me in getting documentation for this SNPRelate.

ADD REPLYlink written 4.8 years ago by always_learning960
1
gravatar for auser_27
4.8 years ago by
auser_2720
Canada
auser_2720 wrote:

Seems like they are github packages also. Maybe try to install using devtools and github instead.

Here's how to install from github : 

http://stackoverflow.com/questions/9656016/how-to-install-development-version-of-r-packages-github-repository

and it seems that the github repos are provided  in the link you mentioned : http://corearray.sourceforge.net/

ADD COMMENTlink written 4.8 years ago by auser_2720
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