I have a file with multi fasta format sequence
>lyrata FEN1
MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE
VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN
KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED
MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR
GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW
TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRKG
NLICLVVSEVIPQYTGSQGTKCLLRQYKPAISNKVSSLHAFGWNSSKNIVSIRLFSLSWG
FNLSEIPESTTKGAANKKTKGAGGRKKK
>Arabidopsis thaliana FEN1
MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE
VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN
KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED
MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR
GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW
TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRKG
NLICLVASEVIPNILDHRVPNACSGSINQPSAIKSPLCMLLDGTPPITLLALGCSLYPGL
PTFRFTWLEEIPESTTKGAANKKTKGAGGRKKK
>Brachypodium distachyon - II FEN1
MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAEG
LTVDCYARFVFDGEPPDLKKRELAKRSLRRDDASEDLNRAIEVGDEDSIEKFSKRTVKIT
KKHNDDCKKLLRLMGVPVVEAPGEAEAQCASLCKNHKAYAVASEDMDSLTFGSLRFLRHI
TDLSFKRSPVTEFEVPKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHG
CIEEVVQNLNNRFTVPEDWPYQEVRTLFKEPNVCTEIPDFQWTSVDKEGIVNFLAIENSF
SSDRVEKAVQKIKAARDRYSPGRVKLLTPVANLSGSITKKEPECVLGSSGQGLKSWSALQ
VCRSSSSDFRYRSYYSSKPLVLGRQSGFHGIPHAFSLI
and i want to extract sequence of defined region. these parameters are present in other file
lyrata 1 108
lyrata 147 234
Arabidopsis 1 108
Arabidopsis 147 234
Brachypodium 1 93
Brachypodium 132 219
I have asked similar question before and got an awk solution but it gives error. Please help me. i am a window user.
HI, thanks for answering my previous and this question.. I found a very good solution of my problem ans love to share with ther have same problem. visit this page. it's working good
This is not a discussion forum, It's Q&A. Youve posted this as an 'answer' which doesn't make sense. To reply to another answer use the comment button underneath it, like I am here.