Question: Jellyfish error on compiling
gravatar for ab.tsubaki
4.6 years ago by
South Africa
ab.tsubaki50 wrote:



Any Jellyfish users out there?

I've downloaded the program, configured it successfully - but when I type "make" i get the following errors:

make  all-am
make[1]: Entering directory `/scratch/abierman'
  CXX    lib/rectangular_binary_matrix.lo
  CXX    lib/mer_dna.lo
  CXX    lib/storage.lo
  CXX    lib/allocators_mmap.lo
  CXX    lib/misc.lo
/scratch/abierman/jellyfish-2.1.3/lib/ In function 'std::string jellyfish::quote_arg(const std::string&)':
/scratch/abierman/jellyfish-2.1.3/lib/ error: 'all_of' is not a member of 'std'
make[1]: *** [lib/misc.lo] Error 1
make[1]: Leaving directory `/scratch/abierman'
make: *** [all] Error 2

Is this a problem? Has anyone else encountered this?


jellyfish next-gen • 2.2k views
ADD COMMENTlink written 4.6 years ago by ab.tsubaki50

You need a more recent version of gcc/clang. gcc-4.4 or above should work.

ADD REPLYlink written 4.6 years ago by lh331k

Perhaps you need to tell your compiler to explicitly use C++11.

ADD REPLYlink written 4.6 years ago by Devon Ryan88k
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