Jellyfish error on compiling
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Entering edit mode
7.6 years ago
ab.tsubaki ▴ 50

Hi

Any Jellyfish users out there?

I've downloaded the program, configured it successfully - but when I type "make" I get the following errors:

make  all-am
make[1]: Entering directory `/scratch/abierman'
  CXX    lib/rectangular_binary_matrix.lo
  CXX    lib/mer_dna.lo
  CXX    lib/storage.lo
  CXX    lib/allocators_mmap.lo
  CXX    lib/misc.lo
/scratch/abierman/jellyfish-2.1.3/lib/misc.cc: In function 'std::string jellyfish::quote_arg(const std::string&)':
/scratch/abierman/jellyfish-2.1.3/lib/misc.cc:86: error: 'all_of' is not a member of 'std'
make[1]: *** [lib/misc.lo]
make[1]: Leaving directory `/scratch/abierman'
make: *** [all]

Is this a problem? Has anyone else encountered this?

Thanks!

next-gen jellyfish • 2.7k views
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1
Entering edit mode

You need a more recent version of gcc/clang. gcc-4.4 or above should work.

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0
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Perhaps you need to tell your compiler to explicitly use C++11.

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