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• Transcription Factor Dna-Binding Sites
  Is there a database with the transcription factor DNA-binding sites for the transcription factors...
• count the number of transcription factor binding sites
  Hi all,  Given ChIP-Seq data of a transcription factor, what tools are used to count the number ...
• Interspecies Transition Of Transcription Factor Binding Sites
  Hi, do you know any good articles and software that analysed inter and intra species transition o...
• Best method for identification of Transcription Factor Binding Sites at genome level?
  Can anyone please suggest a good tool or pipeline for indication of Transcription Factor Binding ...
• Over-Represented Transcription Factor Binding Sites
  Is there a way to identify statistically overrepresented Transcription Factor Binding Sites (TFBS...
• How Many Transcription Factors Are There With Known Transcription Factor Binding Sites?
  According an the article (DOI:10/.1126/science.1066355) there are 2000 to 3000 transcription fact...
• Why Do Transcription Factors Bind To Intronic Regions Downstream Of The Transcription Start Site?
  What is the explanation for transcription factors to bind to intronic regions downstream of the t...
• List of known transcription factor binding sites along with the type of transcription factors (activator/repressor) in hg19 genome
  Hi All, Is there a compiled list available somewhere with known transcription factor binding sit...
• Transcription factor binding site prediction
  how to predict Transcription factor binding site for any crop when we have gene sequence, genome ...
• number of transcription factor binding sites
  Hi all! I use MEME to predict the transcription factor binding site, and it gives me a exact spe...
• Identify TF binding sites genomewide
  What is the best tool to use to get the genomic coordinates (as a BED file) of the binding sites ...
• Can HOMER be used to predict the binding site of a transcription factor on a DNA sequence?
  I wish to find out if HOMER tool can be used to predict the binding site of a transcription facto...
• transcription factor binding sites were not over represented in modules
  Hello, my name is Hamid, I have constructed a condition independent gene co-expression network. T...
• Best tool for finding transcription factor binding sites in a given genomic sequence
  Hi, I was wondering what is the best tool for finding transcription factor binding sites in a lo...
• Transcription Factor Binding Sites
  Hi,  I'm trying to find what transcription factor binding sites are within or around a set of ca...
• Tool for transcription factor driven prediction of binding sites
  Hi everybody! I have a fungal transcription factor, and I suspect it is a negative regulator of ...
• transcription factor binding sites
  My ultimate goal is to locate the binding sites of a specific transcription factor. Is there a pr...
• orthologus transcrition factors and their binding sites
  Hi I am looking for orthologus transcription factors which are common in Mouse, Pig and Human. I ...
• Experimental method to count the mean number of DNA-bound transcription factors
  Hello everyone, I was wondering if there is an experimental method to count the number of bound ...
• transcription factor binding site prediction software/server
  Hi, I have a DNA sequence (fasta file format), i would like to predict transcription factor bind...
• Chip-seq Binding sites
  Where can i find chip-seq peak files except ENCODE for various Transcription factors in various c...