Duplicated genes in DEG
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7.5 years ago
ljohanam ▴ 30

Hey everyone,

I did my DEG analysis using cuffdiff, I found some duplicated genes, these have the same name and the same locus and so on, but the fpkm, log2 fold change and p-value are different, somebody can explain me why happen this is a command error or is normal?... I'm confused

Thank you.

cufflinks Forum CUFFDIFF RNA-Seq • 2.0k views
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Maybe different transcripts of the same gene?

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I think not, because when there are some transcripts for the same gene in the same locus cuffdiff show me in the same line....

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7.5 years ago
ljohanam ▴ 30

I think not, because when there are some transcripts for the same gene in the same locus cuffdiff show me in the same line....

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This is not an answer to the question.

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