I'm trying to convert SRR121576, SRR121577, SRR121578, SRR121579 files to fastq format. I am using ubuntu software and after a long way searching web I found some commands and I tried "fastq-dump -A SRR121576 -D SRR121576.sra" Command And I got "
2014-08-13T08:53:37 fastq-dump.2.1.7 err: option -D is deprecated, see --help
2014-08-13T08:53:38 fastq-dump.2.1.7 err: data bad version while constructing page map within virtual database module - failed SRR121576.sra" this error also I tried "fastq-dump --split-files -A SRR121576.sra" command and I got "014-08-13T08:54:49 fastq-dump.2.1.7 err: data bad version while constructing page map within virtual database module - failed SRR121576.sra
Written 0 spots total" these commad
But after I failed, I tried only searching web to find directly .fastq after seaching I found ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/SRR121577/ this ftp but when I tried to gunzip or archivemanager or winrar with wine all of them failed because of this files corrupted. I tried download again but also it did not work. To sum up, I need these files as .fq formatte to do tuxedo software (I do not now any different way to rna-seq analyzing) Can you help me anyway to repeir archive or to find new fastq file or convert sra to fastq.
Thank you :)