I've been recently trying to annotate a de novo assembled transcriptome from Trinity. I've been using Maker to annotate and try to 'train' the predictors. I'm also running interproscan v5, and after will update the .gff file. What I need to know is how to evaluate/analyze/parse the .gff3 file that is outputted from Maker. I know Maker suggests to use JBrowse, but I'm looking for something a little different. Is anyone aware of a tool available to get annotations and make graphs similar to how Blast2GO outputs?
Question: GFF3 file -- making graphs and getting annotations
5.3 years ago by
st.ph.n • 2.5k
st.ph.n • 2.5k wrote:
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