Hi. I've been looking for a way to make a Manhattan plot with highlights for the genes on interest like this.
Is there any software to draw this?
If not (or it's very expensive), how can I make this using R? I am using qqman.r. What I wish to do is highlight different sets of SNPs in different colors.
I looked at another post similar to my question, but I am looking for a way to highlight arbitrary genes in different colors instead of genes below thresholds although the example I attached shows the latter ones.
Thank you in advance!
(I edited my question to make it clear.)