Question: Obtaining transcription factors from DNA consensus motif
1
gravatar for drautuna
4.6 years ago by
drautuna60
United States
drautuna60 wrote:

Hello all,

I had some variant sites which were allele specifically expressed, so I took those sites and got the surrounding sequences around them and ran them through MEME in MEME Suite to find a common motif at those sites. Now that I've found motif(s) through the MEME output, I'm trying to see what known transcription factors would bind at the motifs. What kind of program would I use for this? This is in the human genome, by the way. 

Thanks

ADD COMMENTlink written 4.6 years ago by drautuna60
1

You need to run FIMO (part of MEME suite) for this.

ADD REPLYlink written 4.6 years ago by komal.rathi3.4k
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