6.4 years ago by
Maastricht, The Netherlands
You could try our CyTargetLinker.
CyTargetLinker is an app (plugin) for the network tool Cytoscape. It is available from the Cytoscape App Store (for free, in case that might suggest otherwise, it is also Open Source).
CyTargetlinker was described in PLoS One and the project site is here.
CyTargetLinker allows you to extend a network with information from resources that are loaded as "Regulatory Interaction Networks" (RegINs). RegINs for transcription factor and miRNA targets from various sources, including Encode, are available for download. You will probably want to use it in combination with the BridgeDb app to make sure you get the identifier mapping right.