Question

where can I download hs37m.fa.gz?

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9.5 years ago

zhangz.cs ▴ 300

Could anyone please tell me where I can download the human reference genome hs37m.fa.gz? Thanks a lot!

Cheers,
Zhen

genome • 2.2k views

ADD COMMENT • link updated 3.1 years ago by Ram 43k • written 9.5 years ago by zhangz.cs ▴ 300

Ram · Answer 1 · 2014-10-22

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9.5 years ago

Denise CS ★ 5.2k

I wonder what the m stands for? Masked sequence? This is the previous assembly of the human genome aka GRCh37. You can download it from the Ensembl FTP GRCh37 site. Both masked and unsmasked fasta files can be found here. It might be worth checking the README for more details on the files themselves.

ADD COMMENT • link updated 3.1 years ago by Ram 43k • written 9.5 years ago by Denise CS ★ 5.2k

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I got the information about the file from http://lh3lh3.users.sourceforge.net/alnROC.shtml. I don't know what the m stands for either.

ADD REPLY • link updated 4.5 years ago by Ram 43k • written 9.5 years ago by zhangz.cs ▴ 300